Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0949 ATGAGGAAGCCTAGTTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATAGATTATATCAACAAACACGGCGAGGTTTGTTGGCGTACACTTCCTCAGGCTGCAGGTTTACTTCGGTGTGGTAAAAGTTGCAGGCTGAGATGGATAAACTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAGGATGAAGAAGATCTCATTATCAAGCTTCATGCGCTACTTGGCAACCGGTGGTCACTTATAGCCGGGAGATTGCCTGGTCGTACAGATAACGAAGTGAAGAACTATTGGAATTCTCATATAAGAAGAAAGCTAATTAGCAAAGGCATTGATCCAAATAATCATCGATTAGACCATAAAGTCCCTTCCCTTCAGAATCCACCCATGTCTGATGATAGTTCAGAACCCTTTGGAACGAAAGACGCTGATAAGAACGAGCCATGTAAATCACATCATCATGTTTACCATTGTGGTGAGGTCTCAGATGATGTAAGTGGCGAGGCTCAGTCATCATATGCCCTTCCGGATTTAAACCTTGATCTCTCGATCTCTATCCCTTCAGAATCACACACTATTTCTGAAAACAACCTAAAACCTTTTCGCCAATCTTATTCGTCCAGGAAACTGCCTTGTGATTCTCCTTCAACGCTTCTTCTGTTTCAATAA 696 0.4224 MRKPSSDIKDLNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLDHKVPSLQNPPMSDDSSEPFGTKDADKNEPCKSHHHVYHCGEVSDDVSGEAQSSYALPDLNLDLSISIPSESHTISENNLKPFRQSYSSRKLPCDSPSTLLLFQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0949 231 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pvu2g0949 231 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pvu2g0949 231 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pvu2g0949 231 MobiDBLite consensus disorder prediction 118 160 - -
Pvu2g0949 231 Gene3D - 5 66 - -
Pvu2g0949 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pvu2g0949 231 PANTHER - 2 213 - -
Pvu2g0949 231 CDD SANT 68 111 IPR001005 -
Pvu2g0949 231 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pvu2g0949 231 CDD SANT 15 60 IPR001005 -
Pvu2g0949 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pvu2g0949 231 SMART sant 65 113 IPR001005 -
Pvu2g0949 231 SMART sant 12 62 IPR001005 -
Pvu2g0949 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 213 - -
Pvu2g0949 231 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Pvu2g0949 231 MobiDBLite consensus disorder prediction 146 160 - -
Pvu2g0949 231 Gene3D - 67 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0949 Pvu-Chr2 15805048 15806659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0949 2 196 MYB Transcription Factor Family AT2G16720 56.281 1.48e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g0949 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0949 K09422 - gmx:100814923 374.4