Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0948 ATGTGCTTAAATACCAAGTTTTTCCTCGCCAGAACTTTCCTAGACATTATCCCATACCTAAACACCTATGTCGGGCGCACTATCCGCTACCTAGACCTTATCACCAGGGCTAATGACACCATTAAGTTGAACTTGGAGGAAAACAAGATTGTTGAGTTCATCAAATTTGATGTTGGGAATGTAGTCATGGTGACAGGCGTAAGGAATAGAGGGCGTGTTGGAGTGATCAAGAGCAGAGAGAAGAACAAGGGATGTTTTGAGACTATCCATGTTCAAGATGCCACTGGGCACGAATTTGCAACTCGTTTGGGCAATGTGTTTACCATCGGCAAGGGAACAAGGGTATCTCTTCCCAAGGGTAAAGGTATCGAGCTTTCCATCATCGAGGAAGCTAGGAAGAAGATTTCCGCCCAACAAGCTACTGCTACTTAA 432 0.4468 MCLNTKFFLARTFLDIIPYLNTYVGRTIRYLDLITRANDTIKLNLEENKIVEFIKFDVGNVVMVTGVRNRGRVGVIKSREKNKGCFETIHVQDATGHEFATRLGNVFTIGKGTRVSLPKGKGIELSIIEEARKKISAQQATAT* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0948 143 Gene3D - 56 124 IPR014722 -
Pvu2g0948 143 Coils Coil 137 143 - -
Pvu2g0948 143 Pfam Ribosomal family S4e 17 50 IPR013845 -
Pvu2g0948 143 PANTHER 40S RIBOSOMAL PROTEIN S4 102 142 - -
Pvu2g0948 143 PANTHER 40S RIBOSOMAL PROTEIN S4 17 101 - -
Pvu2g0948 143 CDD KOW_RPS4 56 110 IPR041982 -
Pvu2g0948 143 Pfam 40S ribosomal protein S4 C-terminus 93 137 IPR032277 -
Pvu2g0948 143 Gene3D - 13 53 IPR038237 -
Pvu2g0948 143 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 102 142 IPR000876 GO:0003735|GO:0005840|GO:0006412
Pvu2g0948 143 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 17 101 IPR000876 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0948 Pvu-Chr2 15800025 15801030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0948 17 141 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 80.315 3.11e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0948 K02987 - gmx:100812132 198.749