Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0935 ATGATGGAACTAGTTAGCGGTAATGAAACAATACCAACTTATCAGTACTGGTTAAATGAGGGATGTAATAGACATCATCAAAGGTTTTCTTATAGCAAGACATCCAAAACGAGTGTTAAGACTTGTTTGAAATCATCAATTACATGTAAATATTGGATAAATGGTAATTGCATGTATGGTGATCAGTGTCGAAATTTACATTCATGGTCTGTTTCAGAGAAAACTTCTATTGGCATGAAAAACACTGTGAAGGAGGACAATATAAGACCTTCAAGATTAATTTGGTGGAGACCACCTTTTGAAGGATTTGTCAAGATTAATTGTGATGGAGCATTTACAATGCACGGAAACAAAGCAGGCGCAGGAGGGGTTGGATACAAGAACTTGATGGTTGAAAGTGATTCTAAAGTTGCCATCGATATCATTACTAGCTTTGTAGTCCAACAAAGAAATGATGATACAAGACAAAGTCAAGATGTTATCTCTTCAATTATGGAGATAAGTAAGACGGCTAACATGATTTATTTGAATCATGTGTTCAGGGAGGTAAACGCAGCAGCGGATGGTCTTGCAAAACATGGGTTGTCATTGTGCCCCGAGCAAGGTGTTAAAGTTTTTGAAGATCCTCCCTATTTCATTGAGAGTCATTTGTATCTAGATAGAACTGGAAAAATATATCGTCGATGA 687 0.3668 MMELVSGNETIPTYQYWLNEGCNRHHQRFSYSKTSKTSVKTCLKSSITCKYWINGNCMYGDQCRNLHSWSVSEKTSIGMKNTVKEDNIRPSRLIWWRPPFEGFVKINCDGAFTMHGNKAGAGGVGYKNLMVESDSKVAIDIITSFVVQQRNDDTRQSQDVISSIMEISKTANMIYLNHVFREVNAAADGLAKHGLSLCPEQGVKVFEDPPYFIESHLYLDRTGKIYRR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0935 228 SUPERFAMILY CCCH zinc finger 46 68 IPR036855 GO:0046872
Pvu2g0935 228 Pfam Zinc finger domain 49 67 - -
Pvu2g0935 228 SMART c3hfinal6 44 69 IPR000571 GO:0046872
Pvu2g0935 228 ProSiteProfiles Zinc finger C3H1-type profile. 43 70 IPR000571 GO:0046872
Pvu2g0935 228 Pfam Reverse transcriptase-like 124 193 IPR002156 GO:0003676|GO:0004523
Pvu2g0935 228 PANTHER OS05G0353850 PROTEIN 87 124 - -
Pvu2g0935 228 PANTHER OS05G0353850 PROTEIN 125 224 - -
Pvu2g0935 228 Gene3D - 32 105 - -
Pvu2g0935 228 SUPERFAMILY Ribonuclease H-like 103 197 IPR012337 -
Pvu2g0935 228 Gene3D - 123 197 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0935 Pvu-Chr2 15313603 15314480 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu2g0935 RVT_3 4.8e-07 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0935 - - pvu:PHAVU_002G090700g 466.463