Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0912 ATGTCCACCAGAAGATCTCGTTCCAGACAATCCGGTGCTTCTGCTGAGATCACGGATGCGCAAATCACCGATCTCGTTTCCAAGTTGCAACAACTTATCCCTGAGCTTCGAGCCAGGCGCTCCGACAAGGTTTCAGCTGCTAAGGTATTGCAGGAGACATGCAACTATATAAAAAACTTGCACAGAGAGGTTGATGATCTAAGTGATCGATTATCAGAGCTTCTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.461 MSTRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0912 93 Coils Coil 57 77 - -
Pvu2g0912 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pvu2g0912 93 Gene3D - 19 89 IPR036638 GO:0046983
Pvu2g0912 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Pvu2g0912 93 CDD bHLH_AtPRE_like 17 77 - -
Pvu2g0912 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Pvu2g0912 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Pvu2g0912 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0912 Pvu-Chr2 14290925 14292389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0912 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 2.95e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g0912 HLH 8.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0912 - - gmx:100804830 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0912 2 14290925 14292389 Pvu2g0912 2 14290925 14292389 ECH
Pvu2g0912 2 14290925 14292389 Pvu9g1954 9 28056083 28057570 ECH
Pvu2g0912 2 14290925 14292389 Pvu8g0425 8 3604196 3606439 ECH