Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0903 ATGGAAGAAGATCAAGAAGTGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGCGGGAGATCCTTGGGTGGTCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAACTTTCGTTTTTCAGCAACAACAATGGTGGAGGAGATAGAGACACGGGAATGATGGGTTCTGAAGGGGGAACTAGCAATGGAGGCTATGGTCTGAGAGAGAACCCGAAGAAGACTTCGAGGTTCACGGATTCCATTGAGGACACTATTTTGGTCTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCATTCCGAGAGAGTATCCCAAAACAACAGCAGCTTATTGGAGGATCAAGATTCGTGGACCGAAAACACGAATGGTAGCCAGAAGATGGTCTTGGATGATAGCCACTCTGACGATGAAGCCACTGCTCCAAACCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCCCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGTCAGAGCAGGAGCAGGAAGAGGTCGCCATGAGTTTGATGATGCTTAGCAGGGATCTTAGTCCTTGGTGTGGTCTCAGTTCTGTTAACTCATTGCACTTTGAATCTCCTTCTTTGGTTCCAACCAATTTAGATTCTAAGGCAGAAGGCAAGAGGGTTGTCTCCAATGGTTCTGTAAAAAAGGTTACCAAACCAAAGGATATGAAGTGGGAGTTTGGCAATTTGGATGCTTCAAATCTCAACTCCAAAGGTACTGAGAGTACTGGATTTGGGGACATGACCATGGTTTCCGTTCAGGGGAATGAGAAGAAGGCCGAGCTTGATACTAATTCTGCATTTGAGGACAATGGAATAGATGATGATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAAGTGAAGGCAAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGCTGAATCGAGCAAAAGCTCCAACAAGAGAGGAAAATTTGAGTGTACTACTTGCAAGAAAATCTTCCACTCTTACCAAGCACTTGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACAGAGTTCGAAGCTGACCTCTCCCCTGACCCAACAACAGAAAGTAAGCTCCTGAAGAATGAATATGTGGAAGAACATGAAATGGTTACTGTTACTGCTACTGGTACTACTGCTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGAGTCCAAAAAGGGGAAAGGTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGACAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGCCTAGTGGGTCTGAGATTACTAGAAACTGTCAAAGTCAAACAGTTGTACTTGGGGGAGAAGCCCCAGAAATAAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGACGTGCTGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCCACAAGCAAGAGGCACTCGTAGGCCTCATTTCTAACTAA 1626 0.4533 MEEDQEVKHLCKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSFFSNNNGGGDRDTGMMGSEGGTSNGGYGLRENPKKTSRFTDSIEDTILVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLLEDQDSWTENTNGSQKMVLDDSHSDDEATAPNRRRRSKRRRTRYVAPSTSSVSFVSESEQEQEEVAMSLMMLSRDLSPWCGLSSVNSLHFESPSLVPTNLDSKAEGKRVVSNGSVKKVTKPKDMKWEFGNLDASNLNSKGTESTGFGDMTMVSVQGNEKKAELDTNSAFEDNGIDDDRNNKYTSIKAKYLDSEVKASSSKSWVKNKSPEAESSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTEFEADLSPDPTTESKLLKNEYVEEHEMVTVTATGTTATGFDNEEERERESKKGKGHECPICLKVFPSGQALGGHKRSHHLPSGSEITRNCQSQTVVLGGEAPEIRDFFDLNLPASTEEEGNSHGRAAEPYKPWWVVGGSHKQEALVGLISN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0903 541 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 541 - -
Pvu2g0903 541 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Pvu2g0903 541 Gene3D Classic Zinc Finger 1 121 - -
Pvu2g0903 541 Pfam C2H2-type zinc finger 350 374 - -
Pvu2g0903 541 Pfam C2H2-type zinc finger 97 118 - -
Pvu2g0903 541 Pfam C2H2-type zinc finger 9 31 - -
Pvu2g0903 541 Pfam C2H2-type zinc finger 446 469 - -
Pvu2g0903 541 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Pvu2g0903 541 MobiDBLite consensus disorder prediction 326 347 - -
Pvu2g0903 541 MobiDBLite consensus disorder prediction 43 76 - -
Pvu2g0903 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 446 468 IPR013087 -
Pvu2g0903 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Pvu2g0903 541 MobiDBLite consensus disorder prediction 127 173 - -
Pvu2g0903 541 MobiDBLite consensus disorder prediction 127 146 - -
Pvu2g0903 541 MobiDBLite consensus disorder prediction 147 161 - -
Pvu2g0903 541 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Pvu2g0903 541 Gene3D Classic Zinc Finger 347 468 - -
Pvu2g0903 541 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 541 - -
Pvu2g0903 541 ProSitePatterns Zinc finger C2H2 type domain signature. 352 372 IPR013087 -
Pvu2g0903 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 350 377 IPR013087 -
Pvu2g0903 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Pvu2g0903 541 SUPERFAMILY beta-beta-alpha zinc fingers 96 372 IPR036236 -
Pvu2g0903 541 SMART c2h2final6 9 31 IPR013087 -
Pvu2g0903 541 SMART c2h2final6 350 372 IPR013087 -
Pvu2g0903 541 SMART c2h2final6 95 117 IPR013087 -
Pvu2g0903 541 SMART c2h2final6 446 468 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0903 Pvu-Chr2 13849173 13852073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0903 337 512 C2H2 Transcription Factor Family AT2G45120 38.764 4.39e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g0903 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0903 - - var:108345025 896.345