Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0901 ATGGAACTCACCGAAGAACAACAACGACAAGTGGAAGCGAACCGCGCAGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAAAGCACAACAACAAGAACAACCTCATCGCGAAGGAGAAATCACCACCAATCCCAACCCTTGGCACCTTTTCAAGTGCCAAAAGTTTCCTAAACCTCAACCCATAAAGTTCCTTGCAAGACTCGAAATATGCTCCTCCGATTCCTTCTCCGTCACGCCCGTTCCTCTCCCTTCATTCCCCTTCCCCGGTCACCAGCACTGCCTCTCCACTCTAAACTCTATTCTCTCAAATGTGATGCTTTCGCACTTCACACAGACCACCGGCGGGGTCAAGGCCTGTGTGTTCAAGCTCACGGAGTACCACGCCGTGCTAAGACAGTTGAAGGCCGAGGCGCAGGCGCTGCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTGGAACGTCTCTCGCATTCGGTCGCTGCTGGGCGGTGGACTCCGGTGCGGCCGGAGCACTTGGCCGACGAGGAGGTAGAGCGCCTGATCGCCAAACTCCCAAGGACTCTCCTTGACGTGTTGCTCCCTTTCCAGCACGACGGACTGCGGTTCGCGTTGAGAAGAGGCGCGCGGTGCCTCATTGCTGATGATATGGGCCTCGGGAAAACGCTCCAGGCTATTGCTATTGCCGGGTGTTTTCTGGATGAAGGGTCTATACTCGTGGTTTGTCCTGCTGTGTTGCGGTTTTCGTGGGCGGAGGAATTGGAGCGATGGCTTCCTTTCTGCTTGCCGGCTGATATACATCTCGTTTTTGGCCATCAAGACAATCCTATATATTTAACACGAAGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTTTAAGAAAGAACATGCTTGAACTTGAATGGGCTCTTCTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTCGATGTGGCTTCAAAAGTCAATCGTATAATTCTGCTATCAGGGACTCCTTCTCTGTCAAGACCGTATGACATATATAACCAGATAAATATGTTATGGCCTGGTTTGCTGGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGTGATTTAAAATATATCAAAGGCAATCAAGGCAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCGAAACGTCGGCAAATTATAAGACTGTTGATAAAGCGATCAGATATAGTTGCTGCTAAAACTGCAATTGGGGAATTAAGTATTGAGGCCACTGAAAGGGAAAGTGAAGACATACCTTTAGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCTAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATTGTTTCTGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCTCAAAGTTCTTGATGGAGTACAGGAGTTTATATGCGAGAAAGGTATAAATTTTGTACGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCGCAAGAAGTAGTGTTCTTGGAGCTACCACAATGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCGGTTAATGTTTACATATTCTGTGCAAAGGATACATTGGATGAATCACATTGGAAAAATATGAACAAAAGTTTGCAACGTGTTTCACGTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCGTTTTTAGACTCATCTTTTAAAAGTGATAATCGTAAAGAACAATCTGCATGCAAAGTTGCAGTAGAAGAAACACAATTGGATGAGCAACCTCCTGCAGTAAATTCAAATGATTCAGAAGCAAGTCAAGATGATAAATCTGGCGAGGGATCTCCTTTTGTTAACAAGTCAACTGAGAGTTTTAATGTTTTGGCTGACGATGTCTCCTGCCAAGATTTAAGCAAAGCTTCAGTTCTGAATGGAAGTTGTGATGCTGATGTTTTTGAAGATATGGAGAGATATACTGGAAAGAGTTTTGAAGACACAAATCCAGATATGAAATGTGTTTCAACAACAGAAGCAGATGACAACCAGTCTGTTCAGCTGGTTGAAGCTGATAGTCATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTAAGCCCATACACTGGAAGGATCCACTTGTATACTTGTATTTTGGGTACTGATAAAAGACCACAACCACTTTATGAAAATTTTCGACCAGAGGAACTTGAATTGTTATGTTATGTTGCTGCTGATGAGAAACAAGTTCATGGTGGAAAACAAAAAAGAGAATATGTATCTGTCAAGGACAACCCCTCCTGTAAGCATGCTCTTCTAGCTTTTGCGGAAGAATGGAAGAACTTAAGGTCAATTGAACGCAGGAAGTTAATTGGAAAACCGTTACAACTTCCTTTGGATGTTGAATTATGCTATTTGAGTGAAAGCAACAACCACAACAGCAAAGGATTATTAAATGGTGGAAGTAAAAGACGCAAGACACCCTTAATAGAGATCAGCTATCCTTTACCACTAGATGCTGTTTGGAGGAAGGTTTATTTGCGAAGTGGTCACGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGACTATGACAGATGATCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCAGGGTAAGAATGCCAAGAGACCTGAATTTCTAGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGACGAGAGTTCATAGAAAAAATAGCACCAAATGTTGCTAAACGGAAGAACATGCTTGAGAAGCTTGTCAATGAACCAACTGAAGGAAATGCATGGCATGCTGATCATATTGTTCCAGTATATGAAGGAGGAGGTGAATGCAAGCTAGAGAATCTGAGGACTCTTTGTGTGGCCTGTCATTATGATGTTACTGCCGCACAATGTGCTGAACGATGTAAAGCAAAAGCAAATGCTAAGAAAAAACTGAAAGAGTTAATGAATAGTATGAAAAATGGTATTAAGGGTTCTGCTGGCGCTAATATTAAGATGATAAAGAAAGGGAGGAGGTTGATTGAAGAGTTCACCCTTTTATTATTGGTGCTTAAAAAGGGGAGAATTATATAA 3480 0.4259 MELTEEQQRQVEANRAAAIAKRKAFLESKAQQQEQPHREGEITTNPNPWHLFKCQKFPKPQPIKFLARLEICSSDSFSVTPVPLPSFPFPGHQHCLSTLNSILSNVMLSHFTQTTGGVKACVFKLTEYHAVLRQLKAEAQALQVEEIPWATFNVVERLSHSVAAGRWTPVRPEHLADEEVERLIAKLPRTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPIYLTRSPRVVVISYTMLHRLRKNMLELEWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVNRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYIKGNQGKYFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAIGELSIEATERESEDIPLENLDEPDGKLSYQELGIAKLSGFREWLALHPIVSGSENASKMIIFAHHLKVLDGVQEFICEKGINFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQEVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNMNKSLQRVSRTTDGKYDAMKEIEVEGISFLDSSFKSDNRKEQSACKVAVEETQLDEQPPAVNSNDSEASQDDKSGEGSPFVNKSTESFNVLADDVSCQDLSKASVLNGSCDADVFEDMERYTGKSFEDTNPDMKCVSTTEADDNQSVQLVEADSHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLCYVAADEKQVHGGKQKREYVSVKDNPSCKHALLAFAEEWKNLRSIERRKLIGKPLQLPLDVELCYLSESNNHNSKGLLNGGSKRRKTPLIEISYPLPLDAVWRKVYLRSGHGKKEKEYTQGWTMTDDPLCKLCQKQCQGKNAKRPEFLEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQLDCHKLVKDTRPLSLERRREFIEKIAPNVAKRKNMLEKLVNEPTEGNAWHADHIVPVYEGGGECKLENLRTLCVACHYDVTAAQCAERCKAKANAKKKLKELMNSMKNGIKGSAGANIKMIKKGRRLIEEFTLLLLVLKKGRII* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0901 1159 Pfam Helicase conserved C-terminal domain 502 604 IPR001650 -
Pvu2g0901 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 418 IPR027417 -
Pvu2g0901 1159 MobiDBLite consensus disorder prediction 24 45 - -
Pvu2g0901 1159 MobiDBLite consensus disorder prediction 683 709 - -
Pvu2g0901 1159 Gene3D - 171 412 IPR038718 -
Pvu2g0901 1159 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1119 - -
Pvu2g0901 1159 SMART helicmild6 521 604 IPR001650 -
Pvu2g0901 1159 CDD HNHc 1056 1096 IPR003615 -
Pvu2g0901 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 656 IPR027417 -
Pvu2g0901 1159 Pfam HNH endonuclease 1062 1093 IPR002711 GO:0003676|GO:0004519
Pvu2g0901 1159 CDD SF2_C_SNF 486 615 - -
Pvu2g0901 1159 SMART ultradead3 191 386 IPR014001 -
Pvu2g0901 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 367 IPR014001 -
Pvu2g0901 1159 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1119 - -
Pvu2g0901 1159 Pfam SNF2-related domain 212 442 IPR000330 GO:0005524|GO:0140658
Pvu2g0901 1159 Gene3D - 413 689 IPR027417 -
Pvu2g0901 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 650 IPR001650 -
Pvu2g0901 1159 Gene3D - 987 1123 - -
Pvu2g0901 1159 Coils Coil 125 145 - -
Pvu2g0901 1159 MobiDBLite consensus disorder prediction 672 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0901 Pvu-Chr2 13792906 13820649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0901 509 622 RAD5 or RAD16-like Gene Family AT1G11100 38.596 1.66e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu2g0901 SNF2_N 9.5e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0901 K25861 - gmx:100788690 1896.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1276 3 30243859 30254661 Pvu2g0901 2 13792906 13820649 PCT