Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0894 ATGGAATTGGAGCCTGATCATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACCTTGATGACGTCACAGAGCAACCTTGTTCCACCACTACCAGGGACACTGTGCTAACTGCAACTACTATTACTACTACTTCTGCTACTAATAACAACCTCCACTTGGCCGACCAGTCCAAAAAGCCTCCGCCAAAGAGGACTTCCACAAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGTATGCCGGCGGCCTGTGCTGCCAGAGTCTTTCAGCTCACGCGTGAGCTCGGACACAAGTCTGATGGAGAGACCATCGAGTGGCTCCTTCAGCAGGCGGAGCCTTCGGTCATCGCTGCCACCGGCACCGGCACCATTCCAGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACCTCCACTGCCGCCGCTGCGGCTGCGGCGCAGCTAAGGAACCGCGCAGAGTGGGACCGGAACATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTTAACCCTATGGGTAACATCAATGTAATTCAGCAAGCGAAACAAGAGCTTCGAGAAGAATCAGGTGGCGGTCTTGAATTGGTGGCTACGGATTCTGATGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGCTCACTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGTAACCAATCCATGAGTGGTGGTGGTGGTGGTGGTGGCGGCAGCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCTGTTGGGAACAGTGGGGTGTATAGAGGAGCTATGTCTCCCCCGGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAACTAGGTTCAGGTATGGTAGGTAGCGGAGGTGGCGGCAGCGGCAGTGCTCAACTCCTAAGTGAAAGTAACTTAGGCATGCTTGCGGCCCTTAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCGGAGTCTCCGGGAAGCGCTGGACAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCAACATTCCTGA 1263 0.5455 MELEPDHHQNGIRTRPNFPLQLLEKKDLDDVTEQPCSTTTRDTVLTATTITTTSATNNNLHLADQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAQLRNRAEWDRNMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLELVATDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQSMSGGGGGGGGSNGNDNPIWAIPSVGNSGVYRGAMSPPGGIHFMNFASPMPLMPGGQLGSGMVGSGGGGSGSAQLLSESNLGMLAALNAYRQIPANGVSESPGSAGQPHGGDDGRDSTSQHS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0894 420 Pfam TCP family transcription factor 74 205 IPR017887 -
Pvu2g0894 420 MobiDBLite consensus disorder prediction 66 83 - -
Pvu2g0894 420 MobiDBLite consensus disorder prediction 56 83 - -
Pvu2g0894 420 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 8 420 - -
Pvu2g0894 420 MobiDBLite consensus disorder prediction 393 420 - -
Pvu2g0894 420 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
Pvu2g0894 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 420 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0894 Pvu-Chr2 13648787 13650680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0894 264 420 TCP Transcription Factor Family AT1G69690 34.320 7.99e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu2g0894 TCP 5.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0894 - - var:108335197 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0894 2 13648787 13650680 Pvu2g0894 2 13648787 13650680 ECH
Pvu2g0894 2 13648787 13650680 Pvu3g1973 3 40318574 40321385 PCT