Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0885 TTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCGACGACTGGAGAGAAAGAGTGGTATTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCAAAGTGCATTGGCCTGAAGAAATCTCTAGTGTTTTATAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGACTCACTATCCACAAAGTACGTAGACAAGACCATTCCTGCTAATGGATCATGGGCTATATGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTATCTCACTCTTGGGTCTCTTCCCTCCCTGAAACAAGAACCTCTCATCATATCCTAACCAAAGATCAAGACAGCACCCAGTTTTGTTCAGACATATCATTTACAAAGAAAACAACCTTAGCCACCCAGTACTGTACTAACAATTACAATGATGGACCACCTTTAACCCCTAATAGTAGTACAGCACTTTGTCCCTTTGATGCTGTCTCATACAAGTCCATCATTAACCCATTGCTTTACAAAGCCTTTGATAATTTTCCCATTTCAAATGGAGACCTTGGCACCAGCTTTCTATTCTCATCATCTCCTTTTGAAACGTCGGATGGTAATACTAATGCTAAATCTACAATGGACGTTTCTTCCATGTTGTTGAACATGTCATCATCGGTGCTTGGAGATTTCAACAAGACTTCAGAGGATAATACAAATACAAGTACAAGCTTTGGTGGGGTGCAAGAGCAGTGTAGTGGCTACCCATTACCATTTCTACGTGAGATGCAAACTACATTTGGTGAGCCACAGTATGATAATATTAATGCATTGGTAAAGGCTCCTAATGTGAATATGCCTCGTGTTGAGGACCAAGAGTTAGGCTTAGAGTTTGAAACAGTAAGATCCATTGGGTTTCCATTCAGTGGCATGCCATTCAATATTGGCGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCTCTTTTCCTTCTGATGTCTCATCTACTTATTCCACAACTAAGTGCAATACTTAG 1227 0.414 FHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSTKYVDKTIPANGSWAICRIFKKTNSTAQRALSHSWVSSLPETRTSHHILTKDQDSTQFCSDISFTKKTTLATQYCTNNYNDGPPLTPNSSTALCPFDAVSYKSIINPLLYKAFDNFPISNGDLGTSFLFSSSPFETSDGNTNAKSTMDVSSMLLNMSSSVLGDFNKTSEDNTNTSTSFGGVQEQCSGYPLPFLREMQTTFGEPQYDNINALVKAPNVNMPRVEDQELGLEFETVRSIGFPFSGMPFNIGDAWKSNMLWDTSSFPSDVSSTYSTTKCNT* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0885 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 406 - -
Pvu2g0885 408 PANTHER PROTEIN FEZ ISOFORM X1 1 406 - -
Pvu2g0885 408 Pfam No apical meristem (NAM) protein 1 122 IPR003441 GO:0003677|GO:0006355
Pvu2g0885 408 Gene3D NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Pvu2g0885 408 SUPERFAMILY NAC domain 1 152 IPR036093 GO:0003677|GO:0006355
Pvu2g0885 408 ProSiteProfiles NAC domain profile. 1 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0885 Pvu-Chr2 13365873 13367300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0885 1 365 NAC Transcription Factor Family AT1G26870 50.526 2.35e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu2g0885 NAM 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0885 - - gmx:100783995 662.144