Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0882 ATGGACCTCACCAACAACGCCAATACTACACACGCAAATCCTCAAACCCCCCAACACCCCACCACCAAGCGCCACCGCCCCACCACCGCTCCTCCGCCCTCACAGCCACCGTCCGCGGTCGTTTGCTACAAGGAGTGCCTCAAAAACCACGCTGCCAGCATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCACGCTCGCTAACTTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCACCGTGACACACAACAGTATCACTCCAACCCCAGGCCAAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCGGGCCTGTGCACTAGCCCAAGCCCAAGCCCGTTGTCAAGCCCCAGCCCGCCGCCTCTCTCCCACCATTTCCCTGGCCGCAGACCAGTCCTGGGGCTCTTTGGCCCGGGAAACGAGCATCACCACACGAGTTTCCATCTTTCCGAGAGCCCGAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACACTTGCAGGAAGAGATCATTGGAGCCTGATGAAAACACCAATGCCAATGCTTCTGATACTCTTAATAACAATCCTTACAGCACCAACCATGACACTCAAAACTGA 795 0.5484 MDLTNNANTTHANPQTPQHPTTKRHRPTTAPPPSQPPSAVVCYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHHRDTQQYHSNPRPNFISFYHSPPPPHHGPGLCTSPSPSPLSSPSPPPLSHHFPGRRPVLGLFGPGNEHHHTSFHLSESPSGKKRFRTKFSQEQKEKMQNFSEKLGWRMQKGDEGLVQDFCNEIGVSRGVFKVWMHNNKNTCRKRSLEPDENTNANASDTLNNNPYSTNHDTQN* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0882 264 MobiDBLite consensus disorder prediction 233 264 - -
Pvu2g0882 264 MobiDBLite consensus disorder prediction 161 175 - -
Pvu2g0882 264 MobiDBLite consensus disorder prediction 1 25 - -
Pvu2g0882 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 25 235 - -
Pvu2g0882 264 MobiDBLite consensus disorder prediction 1 37 - -
Pvu2g0882 264 SUPERFAMILY Homeodomain-like 161 234 IPR009057 -
Pvu2g0882 264 MobiDBLite consensus disorder prediction 241 264 - -
Pvu2g0882 264 Pfam ZF-HD protein dimerisation region 41 95 IPR006456 -
Pvu2g0882 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 235 - -
Pvu2g0882 264 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 43 94 IPR006456 -
Pvu2g0882 264 MobiDBLite consensus disorder prediction 108 143 - -
Pvu2g0882 264 MobiDBLite consensus disorder prediction 108 175 - -
Pvu2g0882 264 Gene3D - 160 234 - -
Pvu2g0882 264 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 94 IPR006456 -
Pvu2g0882 264 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 173 230 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0882 Pvu-Chr2 13326986 13328483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0882 41 229 ZF-HD Transcription Factor Family AT1G69600 50.000 3.77e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu2g0882 ZF-HD_dimer 1.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0882 - - gmx:100817446 333.954