Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0880 ATGAGCGATCACTTGGTGCTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCGGTGGCGCAGCCGGCGCAGCTTCCCTCCGAGCCCTCTCCGCCTCCGGCCGCCGCTGATGCTGCCACAGCCGTCGCCGAGAGTTCCGGCACCGATCCGGTGGAGAATCGTGACGGCGACGGAGGTGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAAACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAATGTGTCCAGCACTGGTGTGATGAGAAAGGAGACATTATTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCACCACCGCCTCGTGCTAATCCTGAAGAAACTACCATTGATATAGGTGGTGGCTGGACAATATCTGGCACTCCTTTGGACTTGCGTGATCCTCGGCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTAGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGGGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCTCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTTTATTACCTTGCTACATTATGGCCTGGGCAATCAGTATACTGCAGCGTCGACGACAAAGACAACAGGAGGCTGCAGCACTAGCGGCGACCCAAGTTGCTTTTGTTCTTCAATCTGGGCAGCGTAGAGGTCTACAGTTCGCAATAGCACCAGGACCAGCCACAGTACACCAGGAACAAGTGTAA 879 0.5301 MSDHLVLFVDRLARPVPVDPVAQPAQLPSEPSPPPAAADAATAVAESSGTDPVENRDGDGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDIICEICHQPYQPGYTAPPPRANPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQQEAAALAATQVAFVLQSGQRRGLQFAIAPGPATVHQEQV* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0880 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 128 IPR013083 -
Pvu2g0880 292 SMART ringv_2 72 119 IPR011016 GO:0008270
Pvu2g0880 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 290 - -
Pvu2g0880 292 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Pvu2g0880 292 Pfam Protein of unknown function (DUF3675) 124 243 IPR022143 -
Pvu2g0880 292 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 290 IPR033275 -
Pvu2g0880 292 MobiDBLite consensus disorder prediction 21 35 - -
Pvu2g0880 292 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Pvu2g0880 292 MobiDBLite consensus disorder prediction 17 64 - -
Pvu2g0880 292 CDD RING_CH-C4HC3_MARCH 73 119 - -
Pvu2g0880 292 Coils Coil 161 181 - -
Pvu2g0880 292 SUPERFAMILY RING/U-box 71 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0880 Pvu-Chr2 13284695 13288722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0880 72 148 C3H Transcription Factor Family AT2G37950 35.955 1.79e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0880 - - gmx:100779674 437.187