Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0878 ATGTTGAATGTTGAGGTGATTGGGAACAATAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGCTGAACCTGGATACCCTGTTATGTTTGGTGGGCCATTTCGAGAGAATGTGAATGCATTGCTTGAATATGCAAATTTGGAGAGTCATCTAAGCATGCCAATGTGGTCTTTTGAGCTTGAAGTTCATCACCACCCACCTCTGCATATCTTCTTGTTTGTGATTGAAGAGCCAATAGAAGCAGTGCTCAATCGTCATTGCAAGCATTGTCAATACGTTGGTAATGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCTAATTTGCCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAGGCATTGCAAGCAAGGAAGGTGAGTTTAAATGATGTTTCAGAGAAGAGAGGAATGGAACTGAGACTTGTGAATGGAATAGCATATAGTGAATCATGGTTTAGTCGTTGGGGTTACAAATTTGGTCGAGGAAGCTTTGGTGTGACTCAATCCATGTACCTGAAGGCCATAGAAGCAATAAGAAGCATGCCATTGTACTTGATCACACACCACATCACCAACTCCAACCATGCCATTCCACTCATCTTCTCAAGGTATCAAACACTTTCAGATCAATCCCTTCTTACCCTTGGTGACCTTTTTTCTTTCATGTTAGACCTCAAATCACGTCTTCCACCAGATCTTTCCATTGCTTCTTATACCACCACTGCCTTGCTTGAGACCAACTCTCGTTGGTCCCCTAAAAGGATTCAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAACACTGAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGAGACACTGGTTTGCTAGATTTTGTCTTGAAGTCATTGGGAAACCATGTTGTAGGAAACTACTTGGTTCGTAGAAGCTTGAACCCTGTCACCAAAGTCTTGGAATATTGCTTGGAAGACATTTCTAAACTCTACACTTGTAATCAGAGTTTGGTAATGAGTAACAAAGTGAAGGACAAATTCAAGATCACACGAACTCAACTAATCAAAGACATGCTTTATCTGTACAACTACATTCTCGTAGACCCTAAACCAATCATGGGATCAGAATTTCTCTCTGCTATACCATTAGCAGCTAGGATCATTCTTGACACCAAGTATTTTATAAAAGACTACTTTGGAGATTTTTCTTACCAACTTGATCTAGGTTCACAAGATAAACTCAACCTTTATTGTACAATTTTGATGAGGAATGGTGATGAGTACCTGAACAAGGCCTTTATGCCACCCCATGAGTGCATCACACTCAAAACAACTGCTACTATCAATGACTTGAAGCTGGAGGTTGAAAGAAGCTTTAGAGAAATGTATTGGGGGTTGAGAAGTTTTGTTGTGGAATCAATTCAGAATTTGAGTGTGAATAATGGGACAGATATGGTTTTTGGACTGACCAAAGTGGGTGAAAAAGTTGTAGCTGAAGGTCGTCACACCAACATGATTGAGCAAATATGTGAACGTGATCCAAATAGTGGTGTAGTGGATTGTGGTTGTGGAACCATAGAAGATGATGGTGAAAGGATGGTCTCATGTGATATTTGTGAAATTTTGCAACACACTAGATGTGTTCGAATTCCAAATGACCAAGACATTCCTCATATTTTTCTATGCAAAAAATGTGAACAAGAAATTGTTTTCTTTCCTTCTTTGCCATAA 1797 0.4012 MLNVEVIGNNKRKRCGRVFRFKNFAEPGYPVMFGGPFRENVNALLEYANLESHLSMPMWSFELEVHHHPPLHIFLFVIEEPIEAVLNRHCKHCQYVGNGHMMHGVFHSNGFGHLLCVNGLEMGSNLPGNQIMDFWNRLCKALQARKVSLNDVSEKRGMELRLVNGIAYSESWFSRWGYKFGRGSFGVTQSMYLKAIEAIRSMPLYLITHHITNSNHAIPLIFSRYQTLSDQSLLTLGDLFSFMLDLKSRLPPDLSIASYTTTALLETNSRWSPKRIQMATRVIVEALKNTEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISKLYTCNQSLVMSNKVKDKFKITRTQLIKDMLYLYNYILVDPKPIMGSEFLSAIPLAARIILDTKYFIKDYFGDFSYQLDLGSQDKLNLYCTILMRNGDEYLNKAFMPPHECITLKTTATINDLKLEVERSFREMYWGLRSFVVESIQNLSVNNGTDMVFGLTKVGEKVVAEGRHTNMIEQICERDPNSGVVDCGCGTIEDDGERMVSCDICEILQHTRCVRIPNDQDIPHIFLCKKCEQEIVFFPSLP* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0878 598 ProSitePatterns Zinc finger PHD-type signature. 543 587 IPR019786 -
Pvu2g0878 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 528 591 IPR013083 -
Pvu2g0878 598 SUPERFAMILY FYVE/PHD zinc finger 535 591 IPR011011 -
Pvu2g0878 598 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 598 - -
Pvu2g0878 598 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 598 - -
Pvu2g0878 598 CDD PHD_MMD1_like 542 587 - -
Pvu2g0878 598 Pfam PHD-finger 543 589 IPR019787 -
Pvu2g0878 598 SMART PHD_3 542 588 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0878 Pvu-Chr2 13257615 13260734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0878 11 598 PHD Transcription Factor Family AT5G22260 46.596 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu2g0878 PHD 5.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0878 - - pvu:PHAVU_002G085000g 1226.85