Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0871 ATGGCCTGTTACCTCATTGGCACACACAATACAGCACAGCACAACAACCCAAACAAGTTCCAGATCCTTCCACAACATTCTGTGAGTCATATCAAGACCACCCCAGGGCGAGATAGCGATGATCTACGTCACGGAAACGGCAACCCTGAAGGCTCCCAGCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAAGGCATGGTGGTCATCGACGCCGATTCGCATCTCGAAGCTCTGTTTCGCGAACTCGGGAGCGGAAAAGGTGGTAGACCTCCGGCTTCGAAAGAATCCATTTTGGCCATGCCGAGTGTGGAGATTAGAGAGGGTTGTGAGGATTTGGAGTGTGTGGTTTGTTTGGAGGAGTTTGGGGTTGGTGGGGTGGCGAAGGAGATGCCATGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAGTGGTTGGGGATGCATGGGTCTTGCCCTGTGTGTAGGTATGAGATGCCCGTGGAGAAGAATTGGGGGAAGAAGAGCGAGGAAGAAGGGGGAGAGAGGAGAAGGGATGGTGGTGGTAGTGGTGATGAAGTTTGGGTTAGTTTTTCTTACAATAGGATTAGGAGAGGCCAGGATAATGATCAAACTGCTTCAAATGATGATTCTCCATCAAGTCTTGGAGACGATGCTGTAGAGAGTTAA 669 0.4963 MACYLIGTHNTAQHNNPNKFQILPQHSVSHIKTTPGRDSDDLRHGNGNPEGSQRQRIILVNPFTQGMVVIDADSHLEALFRELGSGKGGRPPASKESILAMPSVEIREGCEDLECVVCLEEFGVGGVAKEMPCKHKFHGDCIEKWLGMHGSCPVCRYEMPVEKNWGKKSEEEGGERRRDGGGSGDEVWVSFSYNRIRRGQDNDQTASNDDSPSSLGDDAVES* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0871 222 SMART ring_2 115 155 IPR001841 -
Pvu2g0871 222 MobiDBLite consensus disorder prediction 33 47 - -
Pvu2g0871 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 162 IPR013083 -
Pvu2g0871 222 MobiDBLite consensus disorder prediction 167 222 - -
Pvu2g0871 222 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Pvu2g0871 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 25 209 - -
Pvu2g0871 222 SUPERFAMILY RING/U-box 109 162 - -
Pvu2g0871 222 MobiDBLite consensus disorder prediction 30 54 - -
Pvu2g0871 222 Pfam Ring finger domain 114 156 IPR001841 -
Pvu2g0871 222 MobiDBLite consensus disorder prediction 167 183 - -
Pvu2g0871 222 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 25 209 - -
Pvu2g0871 222 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0871 Pvu-Chr2 13145002 13145921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0871 44 214 C3H Transcription Factor Family AT1G26800 54.335 2.79e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0871 - - gmx:100819587 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0871 2 13145002 13145921 Pvu2g0871 2 13145002 13145921 ECH