LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g0865	ATGGCGATACTCCAACTATTTCCAACAAACTCCCAGTTTTCTTGCCACCTCAAACCTCCAGCAACATTGGACCGCGGCATCGTATTCAACGAAAAGGTGCGCTACCTTAAAGCCCTCAAAGTGAAGCCGGAGAAGGCCTTCCACTTAAACCCCATACTCCGCTCCTCCCCTCTCGCCGTCCTCGAATCCGTCACGCGCTGCCTCTACTCCCTCGGAGTTCCACGCACCGCCATGGGTCGCATCCTCGACATGCACCCTGTGCTCCTCACGTGCGACCCCTACTCCCAACTCTATCCCCTCCTTGACTTCCTCCTCCATGAGGTCCGAATCCCCTTCCCCGACGTCCACCTCTGCATCCTCCGCTGCCCCAGATTACTTGTTTCCAGCGTCGATAACCAATTGCGTCCCACACTGCTACTTCTCAGGGAACTAGGTTTCTGTGGGCCCCACTCCCTCACGTGCCAGACTACCCTGCTCCTCGTATCAAGCGTGGAGGACACCATTTTGCCCAAGTTGGAGTTTTTGAAGAGTTTGGGGTTCACCCACATCGAGGTTTGCAACATGGTCGTCAGGTCCCCTGGGTTGTTGACTTTAAGCGTGAAGAAGAATTTGGTGCCCAAGGTGGAATTTTTCTTGAAGGAGATGAATGGGGATGTTGCTGAGCTCAAGAGGTTTCCTCAGTATTTTTCTTTTAGCTTGGAACGGAGGATTAAGCCGAGATTCGGGAGGCTGAGGCAGCTTGGCGTGTCGATGCCGTTGGAAGATATGTTGAAGGTTAGTGATGGCGGGTTTAATGCTAGGTTGCTTGAATTGAGGTTTAAGACTCTTGAGTTTGGAGTAGGACAATACTTGTAG	855	0.524	MAILQLFPTNSQFSCHLKPPATLDRGIVFNEKVRYLKALKVKPEKAFHLNPILRSSPLAVLESVTRCLYSLGVPRTAMGRILDMHPVLLTCDPYSQLYPLLDFLLHEVRIPFPDVHLCILRCPRLLVSSVDNQLRPTLLLLRELGFCGPHSLTCQTTLLLVSSVEDTILPKLEFLKSLGFTHIEVCNMVVRSPGLLTLSVKKNLVPKVEFFLKEMNGDVAELKRFPQYFSFSLERRIKPRFGRLRQLGVSMPLEDMLKVSDGGFNARLLELRFKTLEFGVGQYL*	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g0865	284	SMART	mt_12	116	147	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	SMART	mt_12	150	181	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	SMART	mt_12	79	111	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	SMART	mt_12	219	250	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	SMART	mt_12	44	74	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	SMART	mt_12	186	218	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	Pfam	mTERF	35	264	IPR003690	GO:0003690\|GO:0006355
	Pvu2g0865	284	Gene3D	Transcription termination factor 3, mitochondrial	29	277	IPR038538	-
	Pvu2g0865	284	PANTHER	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	19	277	-	-
	Pvu2g0865	284	PANTHER	CGI-12 PROTEIN-RELATED	19	277	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g0865	Pvu-Chr2	12918639	12920360	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Pvu2g0865		mTERF	2.4e-34	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g0865	K15032		-	gmx:100785219	422.935