Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0834 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCGACCGGAAGAAGTTCGGTGCAGATATTGCCAGGTTCCAGAAAAAGGAGAGCGATACTGATTCGGTGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAATGAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGGTTCAACGTGTTTAGAAATTCCGCATCTGGGGTGCAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAACTGAATAAGATGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAATCAGGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTACCAACGCCTATTCAAAGACAGGCTATTTCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTAATGAAGCTTAAGGACCCAGAAAGAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTGTCTGCTCAGATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAACAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTTAGCAGAGTTGATTATCTTGTCCTTGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTCAAACAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCATCAATCATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTACAGAGAGTCTAAATCCTCCAGTATTGGTTTTTCTCCAAAGCAAAGAACGAGCCAAGGAGCTGTACGGCGAGCTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAACTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACTTTTTACACAGAGGACGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCAATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCCACAAAACCAGAAACAGCATAG 1608 0.4248 MASDSSFLFSGIRFDRKKFGADIARFQKKESDTDSVKIWSVAEDESAKMREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASGVQSSGEVQADEESIELNKMNKKEKNRQLERDAIFRKQHNIHVSGYNVPSPLQSFDELKSGYNCPSYLLRNLKELGFKLPTPIQRQAISVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPERGGIRAVILCHTRELSAQIFRECKKLAKRTKFRIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVDYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFTESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVQSWLMELQKKKWKKHRPKRDSISTKPETA* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0834 535 Gene3D - 85 341 IPR027417 -
Pvu2g0834 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 342 IPR014001 -
Pvu2g0834 535 SMART ultradead3 160 357 IPR014001 -
Pvu2g0834 535 SMART helicmild6 394 475 IPR001650 -
Pvu2g0834 535 Coils Coil 96 116 - -
Pvu2g0834 535 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 532 - -
Pvu2g0834 535 Gene3D - 342 519 IPR027417 -
Pvu2g0834 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Pvu2g0834 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 131 421 IPR014013 GO:0005524
Pvu2g0834 535 CDD SF2_C_DEAD 354 484 - -
Pvu2g0834 535 Pfam Helicase conserved C-terminal domain 371 475 IPR001650 -
Pvu2g0834 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 514 IPR001650 -
Pvu2g0834 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 487 IPR027417 -
Pvu2g0834 535 MobiDBLite consensus disorder prediction 46 74 - -
Pvu2g0834 535 MobiDBLite consensus disorder prediction 46 70 - -
Pvu2g0834 535 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 532 - -
Pvu2g0834 535 CDD DEADc_DDX52 152 345 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pvu2g0834 535 Pfam DEAD/DEAH box helicase 165 329 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0834 Pvu-Chr2 12075791 12081980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0834 135 495 Eukaryotic Initiation Factors Gene Family AT3G19760 31.680 1.86e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0834 K14779 - gmx:100800969 924.85