Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0821 ATGGATCCGGCAGCGATCATCAACGCCGCCGCCGCCGCCAACACAACGTCCTACAACCTCTCAGAGATCTGGCACTTCCCGCCTCCCAACGTGCCAGACGCCACTGCCGCGCTGGGCCTCAGTAGGGCTCATTTCGGACACGCCCTTCCGGACTTCGGCCCTGCCCCGGCCCGAGACAGCGGCCCGGCTAGCATTGGCCCGAAGAAGAGGCGCGACGCCGAGCAGGAGGAATCGGCTAAGGGCGTCTTCACTAGCAATGGCGTGAAGGAGGGTGGTGGTGGTGGTGATGGGAAACGGGTTAAGACAACAGGGAGCCACAAGAGTGAGAGTGCCATAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTTCAGAGCCTCCTTCTAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCCGTAAATTCAAGAATGCCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCCCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 810 0.5247 MDPAAIINAAAAANTTSYNLSEIWHFPPPNVPDATAALGLSRAHFGHALPDFGPAPARDSGPASIGPKKRRDAEQEESAKGVFTSNGVKEGGGGGDGKRVKTTGSHKSESAIGEGESSSGKLAEQGGKPPSEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMPSGIEVFPPKDFDQQTFDTTGIPFASQPTREYSRGSSPEWLHMQVGSGFERAT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0821 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 216 IPR036638 GO:0046983
Pvu2g0821 269 SMART finulus 154 204 IPR011598 GO:0046983
Pvu2g0821 269 MobiDBLite consensus disorder prediction 49 137 - -
Pvu2g0821 269 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Pvu2g0821 269 Gene3D - 145 219 IPR036638 GO:0046983
Pvu2g0821 269 PANTHER BNAC05G07950D PROTEIN 1 269 - -
Pvu2g0821 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 269 IPR024097 GO:0006355
Pvu2g0821 269 CDD bHLH_AtBPE_like 138 223 - -
Pvu2g0821 269 Coils Coil 195 215 - -
Pvu2g0821 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Pvu2g0821 269 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0821 Pvu-Chr2 11874672 11878409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0821 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 48.621 2.14e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g0821 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0821 - - gmx:100794893 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0821 2 11874672 11878409 Pvu2g0821 2 11874672 11878409 ECH
Pvu2g0821 2 11874672 11878409 Pvu3g0744 3 10876079 10878584 PCT