Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0813 ATGTCTCGCACGTGCTCACAGTGCGGGAACAACGGCCACAACTCACGGACATGCACCGACGGTGGTGCTGCTGTTTCCGGCGCCGCGTCTCCCCGGGAAAACGGCTTCATGCTGTTTGGCGTCCGAGTCACCGAAGGAATTTCCTCCTTCAGGAAGAGCGCTAGCATGAACAACCTCTCTCAGTACGACGCCGAATCCAACGCCGCCGATGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGCCGCACGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCACAGACTGTTCCTGCTAGGTTTGCACAAAGTCGGAAAAGGAGATTGGAGAGGAATTTCAAGAAACTTCGTCAAAACTCGCACGCCAACTCAGGTCGCTAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAACCAGAACCGCCGCCGCCGGAGATCTAGCCTCTTCGACATCACTACCGATACGGTGATGGAATCTTCTACAATAATGGAAGAAGAACAAGAAACGGCGGCGGCGCCTATCCGCGCAACATATCCGCCGTCGCATTATGGCGGTTTCCCTGGCGCAGGTTTTCCGATGGGTCTATCTCCAGTTGTCTTGCCGGCGAGCGGTGAGAGGCTAGCCAAGCCGATCAGGCCGACCCCGATTTTGCCGGTGCCACCGTCTTCGAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCTTCTCCGACAAAACTCATAGAGCCTTTACCGTTGTCGTTGAATCTGCCACCGCCGACGCCTCGGTCACACGAACAGTCGCCGACGAATAGTGACCACTCGTCGCCGTCGTCATCTTCATCGGCTTTTCAGGCGATTTCTGCAGGGAAGTTCGGCGGTGGTGGGGACAGTATCATCAGCGTTGCTTGA 903 0.5703 MSRTCSQCGNNGHNSRTCTDGGAAVSGAASPRENGFMLFGVRVTEGISSFRKSASMNNLSQYDAESNAADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQETAAAPIRATYPPSHYGGFPGAGFPMGLSPVVLPASGERLAKPIRPTPILPVPPSSKMASLNLKEKASPTKLIEPLPLSLNLPPPTPRSHEQSPTNSDHSSPSSSSSAFQAISAGKFGGGGDSIISVA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0813 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Pvu2g0813 300 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Pvu2g0813 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Pvu2g0813 300 PANTHER TRANSCRIPTION FACTOR KUA1 1 297 - -
Pvu2g0813 300 Gene3D - 92 143 - -
Pvu2g0813 300 SMART sant 90 140 IPR001005 -
Pvu2g0813 300 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Pvu2g0813 300 MobiDBLite consensus disorder prediction 1 24 - -
Pvu2g0813 300 MobiDBLite consensus disorder prediction 263 284 - -
Pvu2g0813 300 MobiDBLite consensus disorder prediction 1 21 - -
Pvu2g0813 300 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Pvu2g0813 300 CDD SANT 93 138 IPR001005 -
Pvu2g0813 300 MobiDBLite consensus disorder prediction 240 300 - -
Pvu2g0813 300 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Pvu2g0813 300 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 297 - -
Pvu2g0813 300 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0813 Pvu-Chr2 11747158 11749259 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu2g0813 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0813 - - gmx:780554 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0813 2 11747158 11749259 Pvu2g0813 2 11747158 11749259 ECH
Pvu2g0813 2 11747158 11749259 Pvu3g0754 3 11066747 11067936 PCT