Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0804 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTGCTCGAGGAGAAGCGTCCGGGCAACCGCAGATGGCAAACGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCAGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTAGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACGCTTCCATCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGCGATGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGACGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGTAATTCTATTCTTCGTGATAGGAGCTCAATGCCAACAGTACGCCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGGGATCATGACCCCAGTGGTGATCGTCCTGACCTAGATCACGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGATAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGTGAAAAGGATGATAGAGATTATGAGCATGATAGGGAGCGATTTCCTCACAAACGGAATCGTAAGGTTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGTTATGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTAGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGCTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGACAGGGAAAGAGAACGGGATCGAGATAGAGACCGATATAGGGATGATGGGATGAAAGAAAGGGACCGTGAGTTCCGTGAACGGGATAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTACCGGCTCTTACCAAAAAATTACCCAATACCTATAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAATAATACAATTAAAGGAGATATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATCGAAAGATTATATGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAAAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAATGGGCGAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCGAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAAGATACGAAAAGCCTGAGCACCAAAGCCTTGCTGGCAGAAATAAAAGAAATCAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGATGGCCAATTCTACCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTGTATCAACTCATAAAATATTCCTGTGGTGAAATTTGCACAACCGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTATCAAGACTAAGAATAGTAATGTCAAGAATGGCACTGCAAGTGTTGCTGAAAGTGATGGTAGCCCTATTGTGGGTGCTACCAGCATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTATGCCAGAGCCAGTAGACCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGATGACCGTGCAATGCGTAAAACTGAAACTTTGGCAAGTAATTCACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCCAGTGAAAGGTTAGTGAATGCAAATGTCTCACCCGCATCTGGAATGGAGCAAAGCAATGGAAGAACTAACATAGATAATTTGTCAGGACTAATTGCCACTCCAACTAGACCTGTTAATGCTTCTGCTGGGGTAGGACCTGATATACCACCTTTAGAGGGTGGTGATTCTGCAAGACCGGGTACATCCTCAAATGGGGCCATCACTGGAGGCACCAAAGTCCTCCGATATCAAGAGGAATCAGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGTGCATAAAGAAAAGGATGGTGGTATGAGTCGGCAATATCAAGATAGACATGGGGATGATGTTTGTGGTGAAACAAGAGGAGAAAACGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATCACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCTCATGACGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTCCTAACTGTGAATCCACTAGCAAAGTATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCAAGAGTTTTCTATGGAAATGATTCCTTTTATGTGCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCGAAGATTAACTCATCATCTGCTGATAGGAAGTGGAAGGCTTCGAGTGATACAAGCTCCACTGATCAATATGACAGATTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAGTTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAGTAAGCTTCTACAACTATATGCATATGAGAAATCAAGAAAACCTGAAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGAGTTCTTCTCCATGATGAGAATATATATCGCGTTGAATTTTCACCTGGACCAACGAAACTGTCTGTTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCCGTTTCAATGGACCCAAATTTTTCAACCTATCTACTCAATGACTTCCTGTCTGTCGTCCCTGACAAAAAAGAGAAGTCAGGGATTTTCTTGAAGAGGAACAAACGTAGATATGCTGGCAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCGAAGGTCTCTTACGTTTTAGATACTGAAGATTTTTTGTATCGGGTGAGAAGGAAACGAAGAATCTTGCATCCAAAGAGTTCAGGCACCCATGAACAGGCACAGTCCTCAAACATTCGTTCAAGAAGAGTACAACGATTCCGCAACTTGTTTTCCATTACATGA 4215 0.4074 MKRSRDEVFTSCSQLKRPVVSARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMVSHGDHDPSGDRPDLDHDRGLLRIEKERRRVDKEKERREDRDKREREKDDRDYEHDRERFPHKRNRKVEDSGAEPLLDADENFVMRPMSSTCDDKNSLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEDRERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRWPILPNLEFKYSDLDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVIKTKNSNVKNGTASVAESDGSPIVGATSMNPKHINVSRNGDGCMPEPVDQSTSSKAWQSNGDSGVREDRYLDDRAMRKTETLASNSQHGKMNNIAFPPNELSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLIATPTRPVNASAGVGPDIPPLEGGDSARPGTSSNGAITGGTKVLRYQEESVRPFKSEREEVHKEKDGGMSRQYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDHKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVNPLAKYVPPMLHEKDRNSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIVGIQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPEKFVDIVYHENARVLLHDENIYRVEFSPGPTKLSVQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVVPDKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRILHPKSSGTHEQAQSSNIRSRRVQRFRNLFSIT* 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0804 1404 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Pvu2g0804 1404 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Pvu2g0804 1404 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Pvu2g0804 1404 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Pvu2g0804 1404 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
Pvu2g0804 1404 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 1045 1070 - -
Pvu2g0804 1404 PANTHER SIN3B-RELATED 465 1373 IPR039774 GO:0003714
Pvu2g0804 1404 PANTHER SIN3B-RELATED 7 433 IPR039774 GO:0003714
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 422 454 - -
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 826 847 - -
Pvu2g0804 1404 SUPERFAMILY PAH2 domain 327 395 IPR036600 GO:0006355
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 827 842 - -
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 208 310 - -
Pvu2g0804 1404 Pfam C-terminal domain of Sin3a protein 1117 1363 IPR031693 -
Pvu2g0804 1404 SMART hdac_interact2seq4b 493 593 IPR013194 -
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 927 1070 - -
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 1018 1032 - -
Pvu2g0804 1404 Coils Coil 252 275 - -
Pvu2g0804 1404 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Pvu2g0804 1404 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Pvu2g0804 1404 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 970 1010 - -
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 218 305 - -
Pvu2g0804 1404 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Pvu2g0804 1404 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 792 814 - -
Pvu2g0804 1404 MobiDBLite consensus disorder prediction 420 454 - -
Pvu2g0804 1404 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 465 1373 - -
Pvu2g0804 1404 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 7 433 - -
Pvu2g0804 1404 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0804 Pvu-Chr2 11527088 11539238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0804 29 143 WRKY Transcription Factor Family AT4G12020 49.573 5.11e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu2g0804 Sin3a_C 4.6e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0804 K11644 - gmx:100811928 2459.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0804 2 11527088 11539238 Pvu2g0804 2 11527088 11539238 ECH
Pvu2g0804 2 11527088 11539238 Pvu3g0583 3 7233492 7244696 PCT