Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0753 ATGTATAGGGTTCACTCTCAAATCCTTCTCAGCAATGGTGTTTTCACCAACCCCCCTATTCTTTCTCCATATTCTTCATCTTCTTCTTCCCCCTCGGTGCCTTATGTTTCCAACTACCAGAAACAATCAGCTCCATCCCCAGCTTCTTCATCGGGGAGCAAAATAAGCCCAGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTAATTCATCAATTTCCCAATCAAACAGATACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCCCTCCCTGTCTTCTTTTACAAAGAGATTATAGGCTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGATTGTTGCCCACGTGTAACCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAACTCAACGTGCCCTCTCTGTAGAGGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGGTGTCAGGCAGTGGTGGAGTTGGGGTTGGGGTTGGTTCTTTTCACAAAACTGTAGAAAGTCACATACTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCTCTAATAATGGAGATGGGGTGGAGAGAAGTGAAAGTGAGAGCAGTAGAGGAAATTTGGATGTGAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTCCTAGAGGTGATGGAGGGAGCAGTTGCAGCATGAGACAACTGAACGGAAGAGCAGCCCCAAATGGAAGTTCTTTCATTGATGCCGATATTGAGGGCAAGAAAATCAACCTTGCAAGAAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAATTATCCGGTTCATCTGAAGCTCATTTTCATAATTCTACTGTCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGTTACAGAACTTGTAAATTGTGCCATAAACATAATCAGGCAATGCTCTTTGAACAAGAATTAA 1203 0.4256 MYRVHSQILLSNGVFTNPPILSPYSSSSSSPSVPYVSNYQKQSAPSPASSSGSKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPTCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSAFDFESQLEEDGVSGSGGVGVGVGSFHKTVESHILNGKRVFSVRLGKFRSSNNGDGVERSESESSRGNLDVRRCYSMGSFQYVVADSDLRVALGPPRGDGGSSCSMRQLNGRAAPNGSSFIDADIEGKKINLARKGESFSVSKIWQWSRKDKLSGSSEAHFHNSTVTATLPWMNKARVTELVNCAINIIRQCSLNKN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0753 400 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Pvu2g0753 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 376 - -
Pvu2g0753 400 Pfam Ring finger domain 147 190 IPR001841 -
Pvu2g0753 400 SMART ring_2 148 189 IPR001841 -
Pvu2g0753 400 CDD RING-H2_PA-TM-RING 147 190 - -
Pvu2g0753 400 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 376 - -
Pvu2g0753 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
Pvu2g0753 400 SUPERFAMILY RING/U-box 127 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0753 Pvu-Chr2 10346117 10347884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0753 49 360 C3H Transcription Factor Family AT2G18650 42.353 1.12e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0753 - - gmx:100805154 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0753 2 10346117 10347884 Pvu3g0553 3 6738340 6740202 PCT