Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0726 ATGGCCAGCGAGTCGTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTCGGCGCCGATATCGCCAGGTTCCAGAAAAAGGAGAGCGATACTGATTCGGTGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAACCTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGTGCAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAGCTGAATAAGAAGAAGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGCGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAACTTTGACGAGTTGAAAACAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTACCAACGCCTATTCAAAGACAAGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTAATGAAGCTTAAGGACCCAGAAAGAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTGTCTGCTCAGATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGATTATCTTGTCCTTGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTCAAACAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCATCAATCATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTTTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTGAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACAGAGGACGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGACCCAAAAGAGATTCAATCTCCACAAAACCAGAAACAGCATAG 1611 0.4246 MASESSFLFSGIRFDRKKFGADIARFQKKESDTDSVKIWSVAEDESAKTREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASVVQSSGEVQADEESIELNKKKNKKEKNRQLERDAIFRKQHNIHVSGYNVPSPLQNFDELKTRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPERGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVDYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSEQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0726 536 MobiDBLite consensus disorder prediction 87 112 - -
Pvu2g0726 536 CDD SF2_C_DEAD 355 485 - -
Pvu2g0726 536 MobiDBLite consensus disorder prediction 96 112 - -
Pvu2g0726 536 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Pvu2g0726 536 Gene3D - 343 520 IPR027417 -
Pvu2g0726 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 533 - -
Pvu2g0726 536 SMART ultradead3 161 358 IPR014001 -
Pvu2g0726 536 SMART helicmild6 395 476 IPR001650 -
Pvu2g0726 536 Pfam Helicase conserved C-terminal domain 373 476 IPR001650 -
Pvu2g0726 536 Gene3D - 84 342 IPR027417 -
Pvu2g0726 536 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 533 - -
Pvu2g0726 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Pvu2g0726 536 MobiDBLite consensus disorder prediction 45 70 - -
Pvu2g0726 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 515 IPR001650 -
Pvu2g0726 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 488 IPR027417 -
Pvu2g0726 536 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Pvu2g0726 536 MobiDBLite consensus disorder prediction 45 73 - -
Pvu2g0726 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0726 Pvu-Chr2 9588757 9592984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0726 136 514 Eukaryotic Initiation Factors Gene Family AT3G19760 30.446 1.22e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0726 K14779 - gmx:100800969 935.25