Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu2g0693 | ATGTCGATGGACCTTTGTGCCGAAATCCACCGATCCTTCGACGACCGTTACACGCGCTACGCGCGCGACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGCCATCCTATCGTCTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGACCGTTGCGAGGTCCTGGGCCAGACCGCCGCCATCTTCCAGGGCCCGCGCACTTCCCGGAGGTCGGTCATGGAAATTCGCGAGGCCGTCCGAGAGGAGCGCAACGCGCAGGTATCTTTGCTCAACTACCGCAGGGACGGCACGCCGTTTTGGATGCTCTTCAGCGTCTGTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCTTCCACTTCGTCGCTGTTCAGGTCCCGCTTCACAAAAAGGAGGGCTCCAGCGTCAGGGATTTCGGCTTCGGGTGCTGTCGGAAGGAAGTGTGCGCTGATTCGTTATCTGAGCTTGGTCGCGCGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGGGAAGAGCCGTGTCAGGCGAGTGATGAGGAGAAGCGAAGTGCTGTCACAGCCATGGACAGGATCTTCTCTGTGCTAACCCATTTCAGTGAGGCGACTGGCAGATTAGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCGGACATGCCTATTGTTTATGTTAGTGATGCCTTCTTGAAATTGACAGGTTATGGAAGAAATGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGTTCATTTTGGAATTCTCTTCACATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACATTAATAAAAATGACGATCGCCAGTGTTTGAGTCCAGAGAAGAGGCAGCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCGGGATCTTCGAAGTCGTAG | 1158 | 0.513 | MSMDLCAEIHRSFDDRYTRYARDSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYDRCEVLGQTAAIFQGPRTSRRSVMEIREAVREERNAQVSLLNYRRDGTPFWMLFSVCPVFSGDGGAVFHFVAVQVPLHKKEGSSVRDFGFGCCRKEVCADSLSELGRACSVEQVLERDVIELEREEPCQASDEEKRSAVTAMDRIFSVLTHFSEATGRLVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYVSDAFLKLTGYGRNEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDKSSFWNSLHISPVRDASGKVAYFVGVQIEDINKNDDRQCLSPEKRQLSVVGVVKVAVRSLSMTAGSSKS* | 386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu2g0693 | 385 | PANTHER | PROTEIN TWIN LOV 1 | 8 | 383 | - | - | |
| Pvu2g0693 | 385 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 247 | 343 | IPR035965 | - | |
| Pvu2g0693 | 385 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 29 | 127 | IPR035965 | - | |
| Pvu2g0693 | 385 | Gene3D | PAS domain | 14 | 139 | - | - | |
| Pvu2g0693 | 385 | TIGRFAM | sensory_box: PAS domain S-box protein | 257 | 349 | IPR000014 | - | |
| Pvu2g0693 | 385 | TIGRFAM | sensory_box: PAS domain S-box protein | 43 | 126 | IPR000014 | - | |
| Pvu2g0693 | 385 | SMART | pac_2 | 307 | 350 | IPR001610 | - | |
| Pvu2g0693 | 385 | SMART | pac_2 | 94 | 137 | IPR001610 | - | |
| Pvu2g0693 | 385 | SMART | pas_2 | 19 | 88 | IPR000014 | - | |
| Pvu2g0693 | 385 | SMART | pas_2 | 232 | 305 | IPR000014 | - | |
| Pvu2g0693 | 385 | CDD | PAS | 253 | 347 | IPR000014 | - | |
| Pvu2g0693 | 385 | PANTHER | PROTEIN TWIN LOV 1 | 8 | 383 | - | - | |
| Pvu2g0693 | 385 | ProSiteProfiles | PAC domain profile. | 304 | 358 | IPR000700 | - | |
| Pvu2g0693 | 385 | CDD | PAS | 28 | 130 | IPR000014 | - | |
| Pvu2g0693 | 385 | Gene3D | PAS domain | 244 | 383 | - | - | |
| Pvu2g0693 | 385 | Pfam | PAS domain | 30 | 131 | IPR000014 | - | |
| Pvu2g0693 | 385 | Pfam | PAS domain | 244 | 347 | IPR000014 | - | |
| Pvu2g0693 | 385 | ProSiteProfiles | PAS repeat profile. | 257 | 279 | IPR000014 | - | |
| Pvu2g0693 | 385 | ProSiteProfiles | PAS repeat profile. | 17 | 90 | IPR000014 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu2g0693 | Pvu-Chr2 | 7940390 | 7944958 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu2g0693 | 16 | 376 | AGC Kinase Gene Family | AT5G58140 | 30.542 | 1.75e-58 | 202 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu2g0693 | - | - | gmx:100785562 | 659.833 |