Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0682 ATGACTAAATTATGCAGCATCTTTTTATTAACCTGTTTGGTAGTCACCATACCTACCTTCTATGCCAATGTCTTAGAGGATGAGGAGTTTTTGGATAATCAAACTAAATCATTTGATGGATATTGGAAGGGAAGAAAACAAGTTGCAGAAAAACAGAACCAGGAAGCTTATATTACTGACCCATATTCATTCACCATCAACATGACCAATAATATTTCCGACCTCATAACCGGTGAGGAAAAGGGAAGAAGGAATTTGGCGGGAAAACAATCACAGGATTCATGCTTGGCAACAAACCCGATTGACAGATGTTGGAGGTGTGACCCCAAATGGTCAGAGAACCGCAAGAAGCTGGCAGATTGTGTGCAAGGTTTTGGCAGAGACACTATTGGTGGAAAGAAGGGTCCATTCTATGTGGTAACCAGTAACTTAGATAATGACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCGGTAACACGAAATGGACCCTTGTGGATCATCTTTGCTCATAGCATGAACATTAGGCTCAGCCAGGAGCTCATCGTGGCAGGTGACAAGACCATTGATGGAAGAGGAGCTGATATCTACATTGTCAATGGAGCTGGTTTTACCATCCAATTCGTCAAGAATGTGATCATCCATGGAATCAAAATTTTTGACATTAACGCAGGCCAGGGTGGACTTATCAGAGATTCTGAGAGCCACTATGGTCTAAGGACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGTTATATTTGGATTGACCATGTTTCCATGAGAAACGCCAGAGATGGATTGATTGATGCCATTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAACGAGGTGATGCTGTTTGGTGCTAGTGACAGCCATGAGGAAGATAAGATAATGCAGATCACTCTGGTATTCAACCACTTTGGTAAGAGATTAGTCCAAAGGATGCCGAGATGCAGATTTGGTTTTATCCATGTAGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGCAACCGATTCGTAGCCCCAGACAGCAAAGATGCTAAACAGATAACAAAGAGGGAATACTCACTTGAGCCAGAGTGGAAAAAATGGCAATGGAGATCAATCAAGGATGAGGTAATTAATGGAGCTTTTTTCATAGAAAGTGGGCCAGATCTAACCAACAGACCCTTCACAAGGAAGGACATGATATCCTCCAGGCCTGGCACATATGTGGGAAGGCTCACTCGCCATGCTGGAAGCCTTAGATGCATTGTGGGCAAGCCTTGTTAG 1347 0.4328 MTKLCSIFLLTCLVVTIPTFYANVLEDEEFLDNQTKSFDGYWKGRKQVAEKQNQEAYITDPYSFTINMTNNISDLITGEEKGRRNLAGKQSQDSCLATNPIDRCWRCDPKWSENRKKLADCVQGFGRDTIGGKKGPFYVVTSNLDNDMVNPVPGTLRHAVTRNGPLWIIFAHSMNIRLSQELIVAGDKTIDGRGADIYIVNGAGFTIQFVKNVIIHGIKIFDINAGQGGLIRDSESHYGLRTQSDGDGISIFGSSYIWIDHVSMRNARDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSHEEDKIMQITLVFNHFGKRLVQRMPRCRFGFIHVVNNDYTHWEMYAIGGSKHPTIISEGNRFVAPDSKDAKQITKREYSLEPEWKKWQWRSIKDEVINGAFFIESGPDLTNRPFTRKDMISSRPGTYVGRLTRHAGSLRCIVGKPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0682 448 Pfam Pectate lyase, N terminus 37 86 IPR007524 GO:0030570
Pvu2g0682 448 PANTHER PECTATE LYASE 18-RELATED 6 448 IPR045032 GO:0030570
Pvu2g0682 448 Gene3D - 98 441 IPR012334 -
Pvu2g0682 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Pvu2g0682 448 Pfam Pectate lyase 183 364 IPR002022 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Pvu2g0682 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Pvu2g0682 448 PANTHER PECTATE LYASE 6 448 - -
Pvu2g0682 448 SMART amb_all 173 370 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0682 Pvu-Chr2 7639894 7642692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0682 7 448 Polysaccharide Lyase AT1G14420 56.893 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0682 K01728 - gmx:100796307 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0682 2 7639894 7642692 Pvu2g0682 2 7639894 7642692 ECH
Pvu2g0682 2 7639894 7642692 Pvu9g1960 9 28158493 28160576 ECH
Pvu2g0682 2 7639894 7642692 Pvu8g0443 8 3752195 3754070 ECH