Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu2g0678 | ATGCCGCCGAAGCAGTCCAAAGCTGATTTAGCGAAGAAGCAGAAGGTTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAATAAGAGCAAAAATGTTCAGAAGTATGTCCAGAACCTTAAGCAATCAGTGCAGCCCAGGGTCGATCCCGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAACTAAATGATTTGTTCAAAATCGCTGTTACTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCTATATTGTGTGAGTTTTTTAAAGTGGGGCAGTGTGCCAAAGGCTTCAAGTGCAAGTTTTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGATATTTACAGTGATAAGCGTGACGAGGACACAATGGAGGACTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAGATGACTATAATCATAATAAACCAACTGACATTGTATGCAAACACTTTTTGGATGCGGTAGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAGGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAAGCTAACAAGATATCAATCGAGGAGGATATTGAAAATCAGCGTGCCAAAGTGAAAACTACGACTCCTATGACTCCTGATTTATTCTATGAATGGAAGAAGAAGAAGATAGAAGAAAGAGATGCCAATTTAGCTGCACAGCAAGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGACGATGCAGAAGCATATGAAAAATACCAGAGAGAGCCAGATAATGATCAAACTGAACAGAATGGTAATGGGAACGCTGCTCAAGATGGTCCAAGCACCTCAGCTGGTGCTGATAGTGAAGCTCTTGATGACATAGATGATGATGAGGACGAGTTGGACTTGGATGAGTTAAATGAATTGGAAGCAAGCTTAGCCAAGACATCAATCCAAATAAAGGAAACGGGAGCTGAAGCCTAG | 1080 | 0.4278 | MPPKQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRVDPAKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDEDTMEDWDQETLEKVVESKKDDYNHNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGRNCHYRHALPPGYVLKSQMKALLEEEANKISIEEDIENQRAKVKTTTPMTPDLFYEWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQREPDNDQTEQNGNGNAAQDGPSTSAGADSEALDDIDDDEDELDLDELNELEASLAKTSIQIKETGAEA* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu2g0678 | 359 | MobiDBLite | consensus disorder prediction | 39 | 62 | - | - | |
| Pvu2g0678 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 87 | 114 | IPR000571 | GO:0046872 | |
| Pvu2g0678 | 359 | SMART | c3hfinal6 | 87 | 113 | IPR000571 | GO:0046872 | |
| Pvu2g0678 | 359 | SMART | c3hfinal6 | 157 | 194 | IPR000571 | GO:0046872 | |
| Pvu2g0678 | 359 | Coils | Coil | 52 | 72 | - | - | |
| Pvu2g0678 | 359 | Coils | Coil | 207 | 227 | - | - | |
| Pvu2g0678 | 359 | Coils | Coil | 338 | 358 | - | - | |
| Pvu2g0678 | 359 | MobiDBLite | consensus disorder prediction | 292 | 334 | - | - | |
| Pvu2g0678 | 359 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 | 1 | 358 | - | - | |
| Pvu2g0678 | 359 | Pfam | DRG Family Regulatory Proteins, Tma46 | 214 | 296 | IPR032378 | - | |
| Pvu2g0678 | 359 | PANTHER | ZINC FINGER-CONTAINING PROTEIN P48ZNF | 1 | 358 | - | - | |
| Pvu2g0678 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 157 | 195 | IPR000571 | GO:0046872 | |
| Pvu2g0678 | 359 | Coils | Coil | 245 | 265 | - | - | |
| Pvu2g0678 | 359 | Gene3D | - | 204 | 278 | - | - | |
| Pvu2g0678 | 359 | MobiDBLite | consensus disorder prediction | 297 | 316 | - | - | |
| Pvu2g0678 | 359 | Gene3D | - | 86 | 203 | - | - | |
| Pvu2g0678 | 359 | SUPERFAMILY | CCCH zinc finger | 87 | 112 | IPR036855 | GO:0046872 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Pvu2g0678 | DFRP_C | 8.8e-19 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu2g0678 | - | - | gmx:100783113 | 596.275 |