Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0647 ATGGACACAGGCAGCGACCTCGTGTGGTTCCCATGCGCACCCTTCCAATGCATTCTCTGCGAAGGCAAATTCAACGCCACAACACCCCTCAAACTCACGCGCTCCCACCGCGTCTCCTGCCAATCCCCTGCATGCTCCGCAGCACACTCCTCTATGTCCTCCCACGACCTCTGCGCAATCGCACGTTGTCCTCTCGACAACATTGAAACCTTTGATTGCTCTTCTGCCACGTGTCCACCTTTCTACTACGCTTACGGCGACGGAAGCTTCATCGCGCGCCTCTACCGCGATTCGCTATCTATGTCCTCTCTTTTCCTTAAAAACTTCACCTTCGGTTGCGCCCACACCGCACTCGGTGAACCCACCGGCGTCGCGGGTTTCGGTTGGGGCTTGTTGTCCCTCCCTGCGCAACTTGCCACGCTCTCTCCAAACCTCGGTAACCGTTTTTCTTACTGTCTGGTTTCTCACTCTTTCGATGAACAACGAGTTCGCAAACCGAGTCCACTCATTCTCGGCCGCTACGACGACTCCGGCGAGGGTAGTGAGTTTGTTTACACCTCCATGCTTCGGAACCCGAAGCATCCTTATTTTTACTGCGTCGGTCTCTCCGGTATTTCCGTCGGGAAGAAGACTATTCTGGCGCCGGAGATGCTGCGGAGGGTGAACGGCAGAGGGGACGGCGGCGTGGTTGTTGACAGCGGAACCACGTTCACGATGTTGCCGGCGAGTTTGTATAACTCGGTGGTGAGTGAGTTCGACCGGCGAGTCGGGCGAGTTCAGAAACGCGCGAGTAAGGTGGAGGAAAAAACGGGGCTTGAACCTTGTTATTTTTTGGAAGGTTTGGTGGAGGTGCCTACGGTGACGTGGCACTTTGTGGGTAATGATTCAAATGTGGTGCTGCCTAGGGGGAACTATTTTTATGAGTTTTTGGACGGTGATGATGGGGTTAGGAGGAAGGTTGGGTGCTTGATGATGATGAACGGTGGTGATGACAGTGAGTTGAGCGGTGGACCTGGGGCCACACTTGGGAACTATCAGCAGCAAGGGTTCGAGGTGGTGTATGACTTGGAAAACCAGCGCGTGGGTTTCGCTAAGAGGGAATGCGCTTCGCTTTGGGATAACCTCAACCGTCACAAAAGCTAG 1143 0.5459 MDTGSDLVWFPCAPFQCILCEGKFNATTPLKLTRSHRVSCQSPACSAAHSSMSSHDLCAIARCPLDNIETFDCSSATCPPFYYAYGDGSFIARLYRDSLSMSSLFLKNFTFGCAHTALGEPTGVAGFGWGLLSLPAQLATLSPNLGNRFSYCLVSHSFDEQRVRKPSPLILGRYDDSGEGSEFVYTSMLRNPKHPYFYCVGLSGISVGKKTILAPEMLRRVNGRGDGGVVVDSGTTFTMLPASLYNSVVSEFDRRVGRVQKRASKVEEKTGLEPCYFLEGLVEVPTVTWHFVGNDSNVVLPRGNYFYEFLDGDDGVRRKVGCLMMMNGGDDSELSGGPGATLGNYQQQGFEVVYDLENQRVGFAKRECASLWDNLNRHKS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0647 380 CDD pepsin_A_like_plant 78 368 IPR034161 -
Pvu2g0647 380 PANTHER ASPARTYL PROTEASES 1 377 IPR001461 GO:0004190|GO:0006508
Pvu2g0647 380 ProSiteProfiles Peptidase family A1 domain profile. 1 364 IPR033121 -
Pvu2g0647 380 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 1 377 - -
Pvu2g0647 380 SUPERFAMILY Acid proteases 1 373 IPR021109 -
Pvu2g0647 380 Pfam Xylanase inhibitor N-terminal 1 172 IPR032861 -
Pvu2g0647 380 Gene3D Acid Proteases 1 172 IPR021109 -
Pvu2g0647 380 Gene3D Acid Proteases 174 373 IPR021109 -
Pvu2g0647 380 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 229 240 IPR001969 GO:0004190|GO:0006508
Pvu2g0647 380 Pfam Xylanase inhibitor C-terminal 198 364 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0647 Pvu-Chr2 6951729 6952871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0647 1 371 Miscellaneous Gene Families AT1G77480 25.377 8.88e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0647 - - pvu:PHAVU_002G062600g 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0647 2 6951729 6952871 Pvu2g0647 2 6951729 6952871 ECH
Pvu2g0647 2 6951729 6952871 Pvu3g2267 3 43702370 43703800 PCT