Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0623 ATGAAACTTCCTCTCCTTCTTTCTCTGCTTCTTCTGATTTCATTTCTCATTCCTCCTATGCTTGCTGGAACTGCAGAGCTTAGTGCTCTGATGGAGTTGAAGTCCTCTCTAGACCCAGATGGCAAGATCCTAGCCTCCTGGATCAGTGACGGTGACCCATGCAGTGGCTTCTTCCAAGGGGTTGCGTGCAACCAGAACCAAAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCGGGTTGGCTATCTCCAGCTCTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTATAACAACCTTTCTGGTGAGATACCCCCACACATTTCAAATCTCACTGATCTGGTTGATCTCTATCTCGACGTCAATAGTTTATCTGGAACTATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAAGTGCTGCAGTTGGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCCTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGCTTGGGGACGTTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCGACACTAGCACATATTGAACATTTGGAAGTTCTAGACGTTCAGAACAATTCTCTATCAGGGATTGTTCCTTCGGCCTTGAAGAGACTTGGGGAAGGATTCCAAGGTGCAAACAATCCGGGTTTATGTGGGGTTGAGTTTTCTACTTTGAAAGCTTGCAACAAAGATCAGAATTTAAACGTTAACCATATTGATACCTTGGATCGAGATCAACCCAAAAGTCGTAATTCTTCGAAGGCTCTCCCAGAGCCTGCAAATGTTCAGTTGCATTGTGACCATACCCATTGTTCAAAATCAAGGTTTCCTCAAATTGTCATCACAGCAGGTGTTATAGCTGTTAGTCTTACATTCATATGTGCTGGATTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAAAGGATCAGCAATACATCTAGTTCTTCTCAAGGGAAACTTAGTCCTGACAAGCCTAAAGAGTTGTACACAAAAAGTCCTTCTGCCCTTGTTAATATCGAGTATTATAGTGGGTGGGATCATTTGTCTAATGGCCAAAATGCTGATGCGGGTGGATTATTGAATGATTATCTAAGTCAATTCAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTATCTATCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCTGAATTTGTAAAGGGGTTGAACCTACTAACCTCTCTGAGACATGAAAACCTTGTTAGGCTGAGAGGTTTCTGTTGCTCCAGAAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTGTCTCAATATCTTGACTTAGAAGATGGAAGTGGCAATGTGCTTGAGTGGTCCAAAAGAGTTTCTATCATCAACGGCATTGCAAAGGGCATTGGATATCTTCATAGCAATGAAGCAAGCAAACCTACAATAGTTCACCAGAATATTTCAGTGGAAAATGTTCTCCTAGACCATCAGTTTAATCCATTGATCATGGATGCTGGACTACCAAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACTACTGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTCTATCTGGCAAGACGACAATAGGTAGTTCAATACGGACAGCAGTTGAGTCTTTCAGATTTGATGATTCTGTTGACGCAAATCTTAGGGGAAGGTATTCTAAATCTGAAGCAGCCACCCTTTCAAAGCTAGCAATACAGTGTACTCATGAGTTTCCTGACCAAAGACCAACCGTGGTGGATGTGATTCAGGAGTTGACTGTGTCTTCTGCTCATTTTTAA 2052 0.4225 MKLPLLLSLLLLISFLIPPMLAGTAELSALMELKSSLDPDGKILASWISDGDPCSGFFQGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHISNLTDLVDLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHIEHLEVLDVQNNSLSGIVPSALKRLGEGFQGANNPGLCGVEFSTLKACNKDQNLNVNHIDTLDRDQPKSRNSSKALPEPANVQLHCDHTHCSKSRFPQIVITAGVIAVSLTFICAGFLTFFRYRRQKQRISNTSSSSQGKLSPDKPKELYTKSPSALVNIEYYSGWDHLSNGQNADAGGLLNDYLSQFRFNVDEVESATQYLSEASLLGKSKFSAVYKGVLRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSQYLDLEDGSGNVLEWSKRVSIINGIAKGIGYLHSNEASKPTIVHQNISVENVLLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGRYSKSEAATLSKLAIQCTHEFPDQRPTVVDVIQELTVSSAHF* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0623 683 SUPERFAMILY Protein kinase-like (PK-like) 393 678 IPR011009 -
Pvu2g0623 683 SMART LRR_typ_2 90 114 IPR003591 -
Pvu2g0623 683 SMART LRR_typ_2 138 162 IPR003591 -
Pvu2g0623 683 SMART LRR_typ_2 210 233 IPR003591 -
Pvu2g0623 683 SMART LRR_typ_2 186 209 IPR003591 -
Pvu2g0623 683 Gene3D Transferase(Phosphotransferase) domain 1 492 682 - -
Pvu2g0623 683 Gene3D Ribonuclease Inhibitor 24 172 IPR032675 -
Pvu2g0623 683 Pfam Protein tyrosine and serine/threonine kinase 415 676 IPR001245 GO:0004672|GO:0006468
Pvu2g0623 683 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 679 - -
Pvu2g0623 683 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 679 - -
Pvu2g0623 683 MobiDBLite consensus disorder prediction 268 287 - -
Pvu2g0623 683 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0623 683 SUPERFAMILY L domain-like 26 233 - -
Pvu2g0623 683 Gene3D Ribonuclease Inhibitor 173 243 IPR032675 -
Pvu2g0623 683 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515
Pvu2g0623 683 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Pvu2g0623 683 Gene3D Phosphorylase Kinase; domain 1 382 489 - -
Pvu2g0623 683 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0623 Pvu-Chr2 6492696 6495703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0623 5 524 Miscellaneous Gene Families AT4G22730 55.827 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Pvu2g0623 PK_Tyr_Ser-Thr 3.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0623 - - var:108335660 1251.5