Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0616 ATGATCACACAAACCATGGCTTCTCTAACTTCACTTCTTTCTCTTCTCATTCCTCTTCTTGCAACTTCTTATGTGGGTGTAGCTGTGTTTTCCTTACAAGCTTCTCTTCAAACAACTTATTTGGAACCTCTCAGATGCTCCTCTAAGATCAGCACATGCAATGCCTCACTCTACCACATAAGTTACAGTCACAATGCAGATGAGATAGCCAACTTTTATTCCGTTCATCCCTCCCAAATCAAACCTATAACGCGTGGCACAAAGCAAGATTACCTTATAACAGTGCCTTGTTCCTGCCATAACACCAATGGCCTTGCCGGATATTTCTATGATACAACCTACAAGGTGAAGCCTAATGACTCGTCTGTGGAGATTAACAACATTGTTTACAGTGGCCAAGCCTGGTCTATTAATAGAGAAGTGGACCCAAATGAGGACTTGGCAATACATCTTCCTTGTGGGTGTTCAGAAAAAAATGACTCCCAAATTGTTGTCACCTATACAGTTCAGCGGAATGATACACCCACATCAATCGCTACTATGCTAAATGCTACGCTAGATGGCATGGTTAGTATGAACGAAGTTCTGGCTCAAAACCCCTCATACATAGATATTACTTGGGTGCTATATGTTCCAAGCCAACTCAATGGGTTGCCTTCCAAAGGAAAAGACAAGAAACACCATATAATCATTGGCATCTTAGCGGCTGTGGCATTCTTTTCAACTATTACTTTGATCATTCTCGTTGTCGTTCTTAGGAGATCCAGGGCCAATGTAACCGCCAAAAATGATCCAAATATTGTGTCTAAAAGATCAGTTGGATTTAGAACTATTTCCATAAAGAACCGAGACTTTCATGCAGAACATGGAGAAGATGCAACTCCATTTGAATCAGAAAGACCAGTAATTTATGCTCTAGAGGAGATTGAAGAGGCTACGAATAACTTTGATGAAACGCGAAGGATTGGAGTAGGTGGATACGGGAGTGTGTATTTCGGAATGTTAGAGAAGGAGGTTGCTGTAAAGAAGATGAGATCTAATAAATCCAAAGAATTCTATGCAGAACTCAAAGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCTAGCGGAGATGACCACCTTTATCTGGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGAACACCTTCATGATCCATTGCTGAAAGGTCATCAGCCTCTCTCTTGGTGTGCTAGGATTCAAATTGCATTGGATGCAGCAAAAGGTCTTGAATACATACATGATTACACGAAAGCACGATATGTGCATCGTGATATAAAGACAAGTAATATTCTCCTTGACGAGAAGCTCAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCGGGCTACCTTCCACCAGAATCTGTTAAGGAGCTTCAAGTGACTATAAAAACAGATGTATTTGCATTTGGGGTGGTTCTGTCAGAGTTGATAACAGGGAAACGTGCACTATATCGTGACAGCCAACAAGCCAACAATATGAAATCACTTGTTACGGTTGTTAGCCAAATCTTCGGAAATAAGTACCCACAGACTGTTTTACCAGATGTCATAGATGGGAATCTTCAGCATAGCTATCCCATGGAAGATGTCTACAGGATGGCAGAACTAGCTCATTGGTGTTTGTGCGAAGATCCAAATGACAGGCCTGAGATGAGGGAGATGGTTGTGGCATTGTCACAGATTGTTATGTCATCCACCGAATGGGAAGCATCACTAGGTGGAGACAGCCAAGTCTTCAGCGGGGTACTTGATGGAAGATGA 1860 0.4177 MITQTMASLTSLLSLLIPLLATSYVGVAVFSLQASLQTTYLEPLRCSSKISTCNASLYHISYSHNADEIANFYSVHPSQIKPITRGTKQDYLITVPCSCHNTNGLAGYFYDTTYKVKPNDSSVEINNIVYSGQAWSINREVDPNEDLAIHLPCGCSEKNDSQIVVTYTVQRNDTPTSIATMLNATLDGMVSMNEVLAQNPSYIDITWVLYVPSQLNGLPSKGKDKKHHIIIGILAAVAFFSTITLIILVVVLRRSRANVTAKNDPNIVSKRSVGFRTISIKNRDFHAEHGEDATPFESERPVIYALEEIEEATNNFDETRRIGVGGYGSVYFGMLEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARIQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALYRDSQQANNMKSLVTVVSQIFGNKYPQTVLPDVIDGNLQHSYPMEDVYRMAELAHWCLCEDPNDRPEMREMVVALSQIVMSSTEWEASLGGDSQVFSGVLDGR* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0616 619 ProSiteProfiles Protein kinase domain profile. 316 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0616 619 SMART serkin_6 316 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0616 619 Gene3D Phosphorylase Kinase; domain 1 286 386 - -
Pvu2g0616 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Pvu2g0616 619 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 27 619 - -
Pvu2g0616 619 ProSitePatterns Protein kinases ATP-binding region signature. 322 343 IPR017441 GO:0005524
Pvu2g0616 619 Gene3D LysM domain 158 217 IPR036779 -
Pvu2g0616 619 Gene3D Transferase(Phosphotransferase) domain 1 387 608 - -
Pvu2g0616 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 27 619 IPR044812 GO:0019199|GO:0045087
Pvu2g0616 619 SUPERFAMILY LysM domain 165 212 IPR036779 -
Pvu2g0616 619 Pfam Protein kinase domain 317 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0616 619 SUPERFAMILY Protein kinase-like (PK-like) 301 594 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0616 Pvu-Chr2 6416917 6421698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0616 42 619 Receptor kinase-like Gene Family AT1G51940 36.661 1.27e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pvu2g0616 Pkinase 8.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0616 - - gmx:100800907 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0657 3 8836569 8841201 Pvu2g0616 2 6416917 6421698 PCT