Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0610 ATGGAGCGCCACAAATGCAAGCTCTGTTCCAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTTCCTCTTCCCCCCAAACCCCAACGTCTCCATCACTCTCTTAATACTTTCTCTTCCAATTCCTCTTCACGTGCAGAGTTAGAAGACGATGATAACGAAGAAGAAGATGAAGAAGAGCAAGAAAAGGCTCTGATCAACTACGCCTTGCGAGAGAATCCCAAGAAATGCTTCAGGCTCGCAGATCCCGAGTTCAACTCGGGCTCTGTTGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGGCCCCGCAGGCCCGCCAATTCCCAGCCCAAAGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCCGAGCCCGTAAGCTCCGTCTCCGACACTTCCCCCGAGGAAGATGTGGCCATGTGTCTCATGATGCTGTCCAGGGACCGGTGGAGCAAGAACACCAACGCGGCTGTCGGCAGCGACGCCCTCGAAGAGGAAGAAGAGAGATCAGTGGAAGAGATCAAGTTGAGGAGAGTTCGCCGGAAGCACCAGTGCGAGAGTTGCGAGAAGACGTTTCGATCTTCACGTGCATTGGGCAGTCACCGAAGCATCTGCGGAGGGTCGGGTAATGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTGTTTGGGTCTGGTCAAGCACTGGGTGGCCACAAGAGATCTCACCTGGTACCTTCTTCCTCCTCCACCGCGAATGATTCCACCAGGTTCAAAGACAGCTTCATAGATCTCAACTTGCCTGCTCCAACCGAAGAAGACGACCTCAGTGTTGTTTCTGATGCCCAATTCGACGACTAA 891 0.5387 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQRLHHSLNTFSSNSSSRAELEDDDNEEEDEEEQEKALINYALRENPKKCFRLADPEFNSGSVVQDRESETESKNPTRRRSKRPRRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTNAAVGSDALEEEEERSVEEIKLRRVRRKHQCESCEKTFRSSRALGSHRSICGGSGNDSKIFECPFCSKVFGSGQALGGHKRSHLVPSSSSTANDSTRFKDSFIDLNLPAPTEEDDLSVVSDAQFDD* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0610 296 Coils Coil 53 73 - -
Pvu2g0610 296 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Pvu2g0610 296 MobiDBLite consensus disorder prediction 95 150 - -
Pvu2g0610 296 SUPERFAMILY beta-beta-alpha zinc fingers 197 253 IPR036236 -
Pvu2g0610 296 Gene3D Classic Zinc Finger 195 266 - -
Pvu2g0610 296 MobiDBLite consensus disorder prediction 56 70 - -
Pvu2g0610 296 Pfam C2H2-type zinc finger 3 28 - -
Pvu2g0610 296 Pfam C2H2-type zinc finger 231 253 - -
Pvu2g0610 296 Pfam C2H2-type zinc finger 199 218 - -
Pvu2g0610 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 253 IPR013087 -
Pvu2g0610 296 MobiDBLite consensus disorder prediction 31 72 - -
Pvu2g0610 296 SMART c2h2final6 4 26 IPR013087 -
Pvu2g0610 296 SMART c2h2final6 199 219 IPR013087 -
Pvu2g0610 296 SMART c2h2final6 231 253 IPR013087 -
Pvu2g0610 296 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 292 IPR044303 GO:0006355
Pvu2g0610 296 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pvu2g0610 296 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 292 - -
Pvu2g0610 296 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Pvu2g0610 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0610 Pvu-Chr2 6165939 6167517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0610 1 289 C2H2 Transcription Factor Family AT3G60580 37.730 2.15e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g0610 zf-C2H2_6 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0610 - - vun:114173003 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0610 2 6165939 6167517 Pvu3g2276 3 43812834 43813679 PCT