Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0588 CTAAACAGATGCGGAAAAAGTTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGAAACATATCAGTTGAAGAAGAGGATTTGATTACCAGGCTTCACAAACTGCTAGGAAACAGGTGGTCATTGATAGCTAAGAGACTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCATCACACAAAGGTGAAACCAGAAACTTCAATGGCACAACCAACACATTCGACTCAGAATACTGAGGAAAAAGTAGCAGCAGAGAATAAAGAAGGCACTGATCATGATGATGGGAGTGGGGACTCAGAAGTTAACTTTGATGTCAACGAATTCTTCAACTTCTCCATTGAAGGACCCTATGCGTTGGATTGGGTGATCTAG 417 0.4053 LNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLITRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHHTKVKPETSMAQPTHSTQNTEEKVAAENKEGTDHDDGSGDSEVNFDVNEFFNFSIEGPYALDWVI* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0588 138 CDD SANT 26 65 IPR001005 -
Pvu2g0588 138 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 137 - -
Pvu2g0588 138 MobiDBLite consensus disorder prediction 77 114 - -
Pvu2g0588 138 SMART sant 21 69 IPR001005 -
Pvu2g0588 138 MobiDBLite consensus disorder prediction 78 94 - -
Pvu2g0588 138 MobiDBLite consensus disorder prediction 95 114 - -
Pvu2g0588 138 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Pvu2g0588 138 SUPERFAMILY Homeodomain-like 2 73 IPR009057 -
Pvu2g0588 138 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 1 137 - -
Pvu2g0588 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 16 IPR017930 -
Pvu2g0588 138 Gene3D - 26 103 - -
Pvu2g0588 138 Pfam Myb-like DNA-binding domain 22 66 IPR001005 -
Pvu2g0588 138 Gene3D - 1 21 - -
Pvu2g0588 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 71 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0588 Pvu-Chr2 5819575 5820090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0588 1 86 MYB Transcription Factor Family AT5G40330 67.416 4.11e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu2g0588 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0588 K09422 - gmx:100816449 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0588 2 5819575 5820090 Pvu3g2290 3 43987717 43989264 PCT