Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0576 ATGGCAAACCCAAACCCTCTTCAACTTTCTGCTCTTAATCAAATAAAACTGCATCTTCTTGGAGAACTTTCTCCCCTTCCACTCACTCCCTCCTCTAACCTCACCACTACCAACTTCTCTTTTCTATTTCAGGAACCAGACCCTACCTCCTCTCAATCAAGCTCCCTCTGTTCCCAATCTTCAACTTCTAACTCATCCGCAACACTCGACAATTTTTTCTCTGATTTCTTCGACTTCTCACCTACTTCCACACAAAACCAGTTCCCCCTCTTCCAAATCGACTCCAAACCCCAAATACTTGATCACCAAACCCCGAAACCCCACCCTCAAACATCAACCTCGGAATTCACGTTTCCGAACACACAGGATTGTAAGAAACCTCAACCAAATCGAAAGCCGTCGCTGCAAATCTCTCTCCCGAAAAAGACGGAGTGGATCCAGTTCGGAGAGGGCGAGGTTGCGGGAAAGGTTGCGCAGAAGGCGGCGGAAGAGAAGAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAACGCGGCTCCAGGGTGTGGCTCGGGACGTTCGAAACGGCTCTGGAAGCTGCCAAAGCCTACGACCGAGCCGCGTTCAGGCTTCGCGGCTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAACCGCAAACGCCAAAGGGAAGAGGAAGAGCCGGTGCCGGAAGTGGTTAAGAGGGAAAAGATAGAAGATTCCGACGTCACCCGTATTAGGGATGCTCCCTTAACGCCGTCTAGCTGGCCAGGCTTCTGGGCTTCTGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGTTATCTCCTCATCCGGCGATGGGTTATCCACAGCTTATGGTTGTGTGA 915 0.5279 MANPNPLQLSALNQIKLHLLGELSPLPLTPSSNLTTTNFSFLFQEPDPTSSQSSSLCSQSSTSNSSATLDNFFSDFFDFSPTSTQNQFPLFQIDSKPQILDHQTPKPHPQTSTSEFTFPNTQDCKKPQPNRKPSLQISLPKKTEWIQFGEGEVAGKVAQKAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRLRGSKAILNFPLEAGADNRKRQREEEEPVPEVVKREKIEDSDVTRIRDAPLTPSSWPGFWASDANGIFAVPPLSPLSPHPAMGYPQLMVV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0576 304 CDD AP2 166 225 IPR001471 GO:0003700|GO:0006355
Pvu2g0576 304 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Pvu2g0576 304 MobiDBLite consensus disorder prediction 99 135 - -
Pvu2g0576 304 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Pvu2g0576 304 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Pvu2g0576 304 Pfam AP2 domain 167 217 IPR001471 GO:0003700|GO:0006355
Pvu2g0576 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 8 289 - -
Pvu2g0576 304 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Pvu2g0576 304 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Pvu2g0576 304 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 289 - -
Pvu2g0576 304 SUPERFAMILY DNA-binding domain 167 226 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0576 Pvu-Chr2 5691260 5692900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0576 95 304 AP2-EREBP Transcription Factor Family AT5G47230 52.766 3.85e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu2g0576 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0576 K09286 - gmx:100808173 342.813