Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0559 ATGGGAATGGAGGAAGAGGAAGATGAAATGCTGTGGTGTTCGTCTGATTCTTGTTCTTCTGATTCGGACGAGGACAATATCGAAGAACGGAAATCGCAGAACGTGGATGCACTGGTGAGGGGCAACCTCGTCGTGAAGAGACAATCGCTGCTACCGCGGCTTCTGTCAGTATCGCAAGGGGCGGCTGTTTGTAGAAAACCCTTTAAACCTCCATCCTCCAAATCTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCATGGGGTTCTTCCTCTCCTATTCCCAGACCTGCGTTCCCTGATTTCCAACTCAATTCACCAGTAACTGAGTCCCATGTTGATGTTCCTGTTTCTGAGGAGCTCACACCATCTTTGCCCCCGGGGATCGACCCTTTAGTACTCTGGCACCCTCAAGACTCCCAGCATGACCCTTCTAATACTGATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGACTGTGTCTCGGGGCTGTGTACCACGCCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTCAGTCAAGGGTTTGATGGCAAGCCGTTGGTTCGAAAATCCATCATAGTGACTCCTACCAGTCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGAGTTCGTCTTGTTGCTTTATGTGAAAGTACAAGAGAGGATGTTGTCTCTGCGATCGACAGTTTTACAAGTCCCGAAAGAAATTTACAGGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCGTGTGACCTTCTCATATGTGACGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCCCTCCCGTGCAAACGTAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTTCTGCCACTGCTGAAGAGAAGAAGATAGGTGCTGAACGGTCTGCTGAATTAAGTGTCAATGTTAATCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCATTTGCCACCTAAGATAGTTGAGGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATACAAACATTTTATACAATCCAAAAATGTTAAGAGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGACCTACATAACTGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATATATGATACTATACGAAGTGGGAGCCCAGGAATTTCGGGTTTTGAGGACTGTATCCGGTTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCGTGGACGGGAGGGCATGGAGCATGGGTTGAACTATCTGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCAGAGAACAAATGACCGCATTGTTCTTGTCTCAAACTACACTCAGACTCTAGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCATTTGAGGCTTGATGGCTCCACATCAATTAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATTGAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAGAGAGTTTTTATTTATAGATTTTTGAGTGCTGGAACAATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGACTTGAGTCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGACAACATCAAGTCTGAGATCCATGAAAAGATGCAATGCAGTCGGTGTCAAATACATGATGGTCCGGGAAGCACTGATGCTCAATCAACAGAAGATAATGAATCTGGCGAAGAAACATCTGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCATTTTTCACCAAATTCTGTACCAGATGCCATCCTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTAACGGACGACTGGTACCCATCGAGTCTATGATGAGTCCCAAGTTACAGCCAAAGGAACCAAATAAGGGACTACTGAAATCAGTGGCCACTCCTTTTTCTTTGCATAACAGATTACCGCTGCAGTCTGCTTCTGGTGTTGCTAGTATGTCATCATCATCCACTCCCAATGTAAATTCTGTGGGGATTACCAGAAACATGTCCAATGTTACCGACTGCTCTCTTGTTAGTAAACTATTACCACACAAAAGATCATATCCTGCTAATATCAATCATCATAATTTTGAGTGA 2700 0.4278 MGMEEEEDEMLWCSSDSCSSDSDEDNIEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKSHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAFPDFQLNSPVTESHVDVPVSEELTPSLPPGIDPLVLWHPQDSQHDPSNTDFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLSQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTREDVVSAIDSFTSPERNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPSATAEEKKIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILTYITALKKLCNHPKLIYDTIRSGSPGISGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPLKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDRLESQGNFLSTEDLRDLFTFHDNIKSEIHEKMQCSRCQIHDGPGSTDAQSTEDNESGEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFSPNSVPDAILQASAGDEVTFVFTNQVNGRLVPIESMMSPKLQPKEPNKGLLKSVATPFSLHNRLPLQSASGVASMSSSSTPNVNSVGITRNMSNVTDCSLVSKLLPHKRSYPANINHHNFE* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0559 899 CDD SF2_C_SNF 523 651 - -
Pvu2g0559 899 Pfam SNF2-related domain 174 480 IPR000330 GO:0005524|GO:0140658
Pvu2g0559 899 SMART ultradead3 167 370 IPR014001 -
Pvu2g0559 899 PANTHER SNF2/RAD54 FAMILY MEMBER 24 795 - -
Pvu2g0559 899 CDD DEXHc_RAD54 171 412 - -
Pvu2g0559 899 Gene3D - 412 719 IPR027417 -
Pvu2g0559 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 802 IPR027417 -
Pvu2g0559 899 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 24 795 - -
Pvu2g0559 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 686 IPR001650 -
Pvu2g0559 899 MobiDBLite consensus disorder prediction 1 31 - -
Pvu2g0559 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 362 IPR014001 -
Pvu2g0559 899 SMART helicmild6 556 640 IPR001650 -
Pvu2g0559 899 MobiDBLite consensus disorder prediction 717 742 - -
Pvu2g0559 899 Gene3D - 143 411 IPR038718 -
Pvu2g0559 899 Gene3D - 434 703 - -
Pvu2g0559 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 412 IPR027417 -
Pvu2g0559 899 Pfam Helicase conserved C-terminal domain 531 639 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0559 Pvu-Chr2 4939492 4946971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0559 197 660 RAD5 or RAD16-like Gene Family AT3G16600 25.000 7.02e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu2g0559 SNF2_N 5.2e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0559 K10875 - gmx:100781631 1513.05