Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0537 CATCCAAAGAACAAGCAAATGGAGCCTATTGAGGAGATCTCCCAAGAATGGATGAGTTGTCATAGTGAAGTGTACACAGAGGAGGAAGCTGAGTTCATGAGCCAGTTCTTCTATGAACGTTTCAACATGGAAACAGAAGCTCCAAATGCAAATTCTATCTTCTTTATACAAGGGAGTGAGCCCTGTGCTCATAGTACCAAATATATCTTTCCCACAACAAATGCTTCCAACAATTTGGGCCACGTGTTTTCCTTACCAGGGAATGACGCCAAATTGATGAATGAAAATACTGACCAAGAGTTGGGTCTTGGGAGAGAGAATCTTGCTGATATGGATTTGCAGGCTCACAAGGCACGCCAAATATTAGTTTCTGAACCCGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAAAAAAGGTTTAGGAGCTCACTTGAGGGCCCAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCCAAACCATCTTCTTTGAGGAACACTGAAGAGGAAGCAACTCAGACCTTAAGCAGTTGCTTTTCAGATGATGAATCCAAAGATTCTAGAGCAATGAAGTCAAGTGGAAAATCAAGATCTAACAGAGACGCTGCACTTGATCTACAGAGCGCGTATGCAAGAAAGAGAAGAGAGAGAATAAATGAAAGGTTGAGAATTCTACAAACACTGGTCCCAAATGGAACTAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTGCAACATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCCATTGCTTACAATGGAATGAGCATTGGCCCGGAACTTTTAACATCAACATCACCAAGCAACCAAAGAAATGCATAG 882 0.4161 HPKNKQMEPIEEISQEWMSCHSEVYTEEEAEFMSQFFYERFNMETEAPNANSIFFIQGSEPCAHSTKYIFPTTNASNNLGHVFSLPGNDAKLMNENTDQELGLGRENLADMDLQAHKARQILVSEPEKDNTRSMEKSEKRFRSSLEGPENKRNVKSKKNPKPSSLRNTEEEATQTLSSCFSDDESKDSRAMKSSGKSRSNRDAALDLQSAYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQHVKFLQLQIKLLSSDDLWMYAPIAYNGMSIGPELLTSTSPSNQRNA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0537 293 MobiDBLite consensus disorder prediction 120 206 - -
Pvu2g0537 293 PANTHER TRANSCRIPTION FACTOR BHLH54 39 281 - -
Pvu2g0537 293 MobiDBLite consensus disorder prediction 121 156 - -
Pvu2g0537 293 SMART finulus 209 258 IPR011598 GO:0046983
Pvu2g0537 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 252 IPR011598 GO:0046983
Pvu2g0537 293 CDD bHLH_AtIND_like 206 266 - -
Pvu2g0537 293 MobiDBLite consensus disorder prediction 182 196 - -
Pvu2g0537 293 MobiDBLite consensus disorder prediction 166 181 - -
Pvu2g0537 293 Gene3D - 206 261 IPR036638 GO:0046983
Pvu2g0537 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 281 - -
Pvu2g0537 293 Pfam Helix-loop-helix DNA-binding domain 213 253 IPR011598 GO:0046983
Pvu2g0537 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 269 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0537 Pvu-Chr2 4797526 4798963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0537 12 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.192 1.31e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g0537 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0537 - - var:108319891 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0537 2 4797526 4798963 Pvu2g0537 2 4797526 4798963 ECH
Pvu2g0537 2 4797526 4798963 Pvu7g0458 7 3567083 3568721 PCT