Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0513 ATGAAGAAAAAGTGTAGTTCAGGTTGCCAAAGGATTCCAATTGAGAAAATACCAAAAAAGGGTCACTTGCAGGTGACATTTTCAAAACGTCGTTGGGGACTCTTCAAAAAGGCTAGTGAGCTTTGCACACTTTGTGGAGTGGAAATTGCCATCATTGTTTTCTCTCCTGCTGATAAGGCCTTTTCATTTGGGCACCCAGAAGTTGAATCTGTGATTGATTCTTATGTAACTCCAAATTCATCACTGGAGAGTAATCTTGGTAATGGTCACCAACTTGTTGAGGCTCATCGTGGTGCTAATATTCGTAATCTTAACATGCAACTTACTCAGATTGTTGATGAGCTAGAGATGGAGAAAAGGCACGGAGAAGAGCTTGATCGAATGTGGAAAACTAGACAGAGACAATTCTGGTGGGAGATCCCAGTTAATGAACTTGGATTGCAAGAGTTGCAACATTTAGTGTTTTCATTAGAGGAACTAAAGAACAGTGTTGCAAAATATGCTACTCAAATAATGCTAATGGATCAAACAACTCTTGCTCCACCGATTACTGGGCCCAGGCCCAGTGGATTTGGGCCTTATGATGTCTTCGATAACAAACATGCCGAGATTTACCCTAATAATCCCAATCTGAATTTTCCATATTGA 648 0.4043 MKKKCSSGCQRIPIEKIPKKGHLQVTFSKRRWGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESVIDSYVTPNSSLESNLGNGHQLVEAHRGANIRNLNMQLTQIVDELEMEKRHGEELDRMWKTRQRQFWWEIPVNELGLQELQHLVFSLEELKNSVAKYATQIMLMDQTTLAPPITGPRPSGFGPYDVFDNKHAEIYPNNPNLNFPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0513 215 SUPERFAMILY SRF-like 10 77 IPR036879 GO:0003677|GO:0046983
Pvu2g0513 215 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Pvu2g0513 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 177 - -
Pvu2g0513 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Pvu2g0513 215 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Pvu2g0513 215 PANTHER MADS BOX PROTEIN 8 177 - -
Pvu2g0513 215 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Pvu2g0513 215 Gene3D - 88 178 - -
Pvu2g0513 215 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Pvu2g0513 215 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Pvu2g0513 215 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0513 Pvu-Chr2 4634989 4635636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0513 6 198 Type I MADS-box Gene Family AT2G24840 46.341 4.88e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g0513 SRF-TF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0513 - - gmx:100793705 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0513 2 4634989 4635636 Pvu2g0513 2 4634989 4635636 ECH
Pvu2g0513 2 4634989 4635636 Pvu7g0489 7 3876555 3877440 PCT