Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0497 ATGTTTCACACCAACATGTTTGATTCTCACCCTCACATGCTTGATATGTCACCCCACAAGACTACCTTCTCTGAGACTGACTTGGGAAGGCCCAGAGATGATGAATATGAGACCAAGTCTGGCACTGACACCATGGACGCTCCTTCCGGTGACGACCAAGACCCTAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAACAGTGTCCCCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCAGGGATTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAGCATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAATGAAAAGCTTCGTGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGCGGAGGCCCAGCTGCCCTTGGCGAAATGTCTTTCGACGAGCAGCACTTGAGGATAGAGAATGCTCGGTTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAGTATGTTGGAAAGCCGGTGACGTCTTCGTACTCCAACCTTTCATCTCTCAACAACAATCGCATGCCTGTCGGTAACTATGGAGCACAGTCAGACACGGTAGGAGAAATGTATGGTGGTAGTGACCCTTTTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACTCTTTATGGGTCCCCGGCAACCACCACTCTGAGATTCTAAATGAAGAAGACTATTTGAGGACTTTCCCTAGTAGAAGTTTGGGTCCCAAACCTTTGGGCCTGAGATCTGAAGCTTCAAGGGAATCTGTGGTGATCATCATGAATCACATTAACCTTATTGATATCCTCATGGATGTGAACCAATGGTCGACTATGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGTGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCCGAGTTCCAAGTCCCTTCACCGCTTGTTCCAACTCGTGAGAACTATTTCGTGAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTGGATGTTTCCTTGGATAATCTGCGACCCAGCACGATCTCAAGAAGCCGGAGAAGGCCCTCTGGCTGTTTAATTCAAGAATTGCCAAATGGGTACTCAAAGGTTACATGGATCGAACATGTAGAAGTGGATGATAGAGCAGTGCATAGCATATATAAAACTTTAGTCAATTCCGGTCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACATTAGACAGACAGTGCGAACGTCTTGCCAGTTCAATGGCCAACAACATACAACCAGGGAACCTCTGTGTGATAACGAGTGCTGAGGGAAGGAAAAGTATGCTGAAGCTGGCAGAGAGAATGGTGATTAGCTACTGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACACTCTCCGCAACTGGATCTGATGACGTAAGGGTCATGACTAGAAAGAGCACTGACGAACCTGGCAGACCACCCGGTATAGTGCTAAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAAGGTTTTTGATTTCCTACGTGCTGAAAACTCAAGAAATGAGTGGGACATTCTTTCCAATGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGCCGTGAACCTGGCAACTGTGTGTCCCTACTTAGAGTCAATAGTGCAAATTCGAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTAGTGTTGGGTGGAGGGGATCCAGATTATGTTGCCCTGCTTCCATCAGGCTTTGCTATTCTTCCTGATGGGCCTGGAATAAACAGAGGTTCAATACATGATGTTGGATCTGGAGGTTCTCTACTCACAGTTGCCTTCCAGATCTTAGTTGATTCAGCCCCAACAGCAAAACTATCTCTGGGTTCAGTGGCTACTGTTAACAGTCTAATTAAGTGCACAGTTGAAAGGATCAAGGTTGCAGTGATACGTGACAACACCTAA 2184 0.4725 MFHTNMFDSHPHMLDMSPHKTTFSETDLGRPRDDEYETKSGTDTMDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNRMPVGNYGAQSDTVGEMYGGSDPFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGNHHSEILNEEDYLRTFPSRSLGPKPLGLRSEASRESVVIIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCERLASSMANNIQPGNLCVITSAEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGSDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKKVFDFLRAENSRNEWDILSNGGLVQELAHIANGREPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGINRGSIHDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNT* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0497 727 CDD START_ArGLABRA2_like 243 467 - -
Pvu2g0497 727 SUPERFAMILY Homeodomain-like 45 118 IPR009057 -
Pvu2g0497 727 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Pvu2g0497 727 Gene3D - 48 134 - -
Pvu2g0497 727 SMART START_1 248 468 IPR002913 GO:0008289
Pvu2g0497 727 Pfam START domain 249 468 IPR002913 GO:0008289
Pvu2g0497 727 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Pvu2g0497 727 SUPERFAMILY Bet v1-like 489 718 - -
Pvu2g0497 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 16 724 - -
Pvu2g0497 727 ProSiteProfiles START domain profile. 239 471 IPR002913 GO:0008289
Pvu2g0497 727 CDD homeodomain 61 119 IPR001356 GO:0003677
Pvu2g0497 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 724 IPR042160 -
Pvu2g0497 727 Coils Coil 112 147 - -
Pvu2g0497 727 MobiDBLite consensus disorder prediction 1 68 - -
Pvu2g0497 727 MobiDBLite consensus disorder prediction 25 41 - -
Pvu2g0497 727 SMART HOX_1 60 122 IPR001356 GO:0003677
Pvu2g0497 727 Gene3D - 315 470 IPR023393 -
Pvu2g0497 727 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Pvu2g0497 727 SUPERFAMILY Bet v1-like 240 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0497 Pvu-Chr2 4498127 4507189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0497 1 725 Homeobox Transcription Factor Family AT4G04890 77.598 0.0 1162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g0497 START 6.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0497 K09338 - gmx:100815499 1346.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0497 2 4498127 4507189 Pvu2g0497 2 4498127 4507189 ECH
Pvu7g0544 7 4294527 4299835 Pvu2g0497 2 4498127 4507189 ECH
Pvu5g0964 5 27672525 27674096 Pvu2g0497 2 4498127 4507189 ECH
Pvu2g0497 2 4498127 4507189 Pvu7g0544 7 4294527 4299835 PCT