Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0489 ATGGGAACTCCTTTTCGATTGGTCGGTCGGATGCTTCTCTCTTCCTCTGAAAACCGATGCTCTACTTCTATTTTGCTACTCTACCCCTCGTCCTCAAAATCTCCAGTCTCGGATAATACCTGCAAAAGACACTCGGTATTCAACATTCAGTATTCCGAGTACTGTATGATGATGACGAGAGTGAAAAGAAAAAAGAGAAAAGGGCATGGAGGAAATTTCGGAATTACCCCTCCGATCTGGCACTCACTCGCGTGTTCAAATCCCGAATTCCATTTGGAGCACCCTTTTTTTTCCTTCTTCTCTTCTTCTTCTTCTCTTCCGCGCCTCGTTTCTAACACTTTGGGTTGCGTCTCCCAAAGACAGAGGGACCTTCTCCTTCTTCTTCCTCTTCTCCTTCTTTTCTCGTCCATGGACCTTCACGCGCGACCAGATCACTGCCTCCCGGAGAGGAAAGGTCAGAAGAGGAAGCTGGAGGAGGATTTCGAAGACGACCGACAGATCTCCGCGCCTCCCACCGGCCACGCTCGGGACGCCCTCCTCTCCGACGTCAAGGAACAGGTCATCGTCCTCGATTCCACCTTCTCATGGAAGGAATCCGATCGTGCTGCCGCCAAGCGCGCCACGCACGCCCTTGCCGATCTCGCAAAAAACGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCCATTCCTGCTCTGGTTAAACATCTTAAAGCGCCTCCTCTAGTCGGAAGCGACCTGTTGCAGAGGCCAATGCCGTTTGAGCACGAGGTCGAGAAAGGAAGTGCTTTCGCGCTTGGACTTCTCGCAGTCAAGCCGGAGCACCAGCAGCTCATCGTTGACAGTGGTGCTCTAAAACATCTCGTTGATCTTTTGAAAAGACATGAAAACGGCTTAACATCTCGTGCCATTAATAGTCTAATTCGTAGGGCTGCAGACGCGATTACTAATCTTGCTCATGAGAACAGCAGTATTAAGACTCGTGTCAGGATCGAAGGTGGGATTCCACCGCTTGTTCATTTACTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGAGAACCCTTGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTTCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCCCTACAACCGGTCATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGGGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACGCATAATCAAGCTGGTATTGCACACAATGGTGGCTTGATTCCCTTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGGCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCACGGGCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAGAAGGCTTTTCAAAGACGAGTTGCTTTGGCTCTTGCTCACCTTTGTTCCGCTGATGACCAGAGAAAAATATTTATAGAACACCATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTATTATAACTCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGGCACGACTCTGTCTCCAGTAGATGCTGCACCCCCATCTCCCACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATTTGTCTGCTTGCATCTTCAGACGCATTCCGTGCTATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTTGAGATCACTCTTGACATTGCCCAAGATCTCCTCCGAGCAGCCGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGCGAGTACACAATTGCGCAGGATATATCACTTGAGAGCGTATCAAGTATGTATGAACTTTCTGAAGCATTTAATGCTATATCGTTGAGGCACACATGCATCCTTTTTATCTTGGAACACTTCGATAAATTGAGTGGAAAGCCAGGACACTCCCACCTGATTCAGCGTATAATACCTGAGATTCAGAATTACTTTGGTAAAGCCCTTACAAAGGGCATTTCCTACAATCAGCCGTAG 2532 0.4617 MGTPFRLVGRMLLSSSENRCSTSILLLYPSSSKSPVSDNTCKRHSVFNIQYSEYCMMMTRVKRKKRKGHGGNFGITPPIWHSLACSNPEFHLEHPFFSFFSSSSSLPRLVSNTLGCVSQRQRDLLLLLPLLLLFSSMDLHARPDHCLPERKGQKRKLEEDFEDDRQISAPPTGHARDALLSDVKEQVIVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLKAPPLVGSDLLQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHENGLTSRAINSLIRRAADAITNLAHENSSIKTRVRIEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIEHHGLELLMGLLGSYYNSKQQLDGAVALCKLANKGTTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLESVSSMYELSEAFNAISLRHTCILFILEHFDKLSGKPGHSHLIQRIIPEIQNYFGKALTKGISYNQP* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0489 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 368 IPR000225 GO:0005515
Pvu2g0489 843 SUPERFAMILY ARM repeat 574 747 IPR016024 -
Pvu2g0489 843 Pfam Armadillo/beta-catenin-like repeat 448 487 IPR000225 GO:0005515
Pvu2g0489 843 Pfam Armadillo/beta-catenin-like repeat 364 403 IPR000225 GO:0005515
Pvu2g0489 843 Pfam Armadillo/beta-catenin-like repeat 329 361 IPR000225 GO:0005515
Pvu2g0489 843 CDD BTB_POZ_ARIA_plant 664 779 - -
Pvu2g0489 843 SMART BTB_4 677 774 IPR000210 GO:0005515
Pvu2g0489 843 Gene3D - 344 549 IPR011989 -
Pvu2g0489 843 Gene3D Potassium Channel Kv1.1; Chain A 660 806 IPR011333 -
Pvu2g0489 843 SUPERFAMILY ARM repeat 204 546 IPR016024 -
Pvu2g0489 843 SUPERFAMILY POZ domain 669 771 IPR011333 -
Pvu2g0489 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Pvu2g0489 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 604 645 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 489 529 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 217 271 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 364 404 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 322 362 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 406 446 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 272 320 IPR000225 GO:0005515
Pvu2g0489 843 SMART arm_5 448 488 IPR000225 GO:0005515
Pvu2g0489 843 Gene3D - 178 343 IPR011989 -
Pvu2g0489 843 Gene3D - 550 659 IPR011989 -
Pvu2g0489 843 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 148 838 - -
Pvu2g0489 843 Pfam BTB/POZ domain 670 772 IPR000210 GO:0005515
Pvu2g0489 843 MobiDBLite consensus disorder prediction 145 170 - -
Pvu2g0489 843 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 148 838 IPR044282 -
Pvu2g0489 843 MobiDBLite consensus disorder prediction 145 173 - -
Pvu2g0489 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515
Pvu2g0489 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 333 IPR000225 GO:0005515
Pvu2g0489 843 ProSiteProfiles BTB domain profile. 677 744 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0489 Pvu-Chr2 4382397 4393303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0489 432 546 U-box Gene Family AT3G46510 28.696 1.64e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu2g0489 BTB 3.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0489 - - pvu:PHAVU_002G047400g 1602.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0489 2 4382397 4393303 Pvu2g0489 2 4382397 4393303 ECH
Pvu2g0489 2 4382397 4393303 Pvu7g0557 7 4429646 4439041 PCT