Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0485 ATGCTGGCGAATCATTTCCAGAACGGCATCGAAACGGCGAGGCTCGTTTGGTCGCGGATTCCAAATTCTGATGAATCGCAGCTCCTCGACGACGCCGTCGGCATCCTCAAGAAGAACGACGGAGGCGGTGTTGAGAGTCTAGACTATGAAGTCATAGAGAATTTTGCTTACCGTGAGGAACAGGCGCTGAGAGGGAAGTTGTATGTGAGCTATTTGCTTGTGGTGAAATGGTTCTTCGCCTTGCTCATTGGCATTTGTACAGGACTTGCTGCTGTTTTAATCAATATTGCTGTTGAAAATTTTGCTGGCTGGAAGTTTTCGGTGACATTTGATATAATTCAGAAATCATATATTGCTGGATTCGTTGTATACGTTCTGATCAACTTGGCTTTGGTGTATTCTTCTGTATATATTATCACTCAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTAGTTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGTGGAGGCCTTGCTTTGGGCAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGGGGATCCACTAAGTATCATATAAATTCAAGGTGGTTTCAAGTATTCAGAAGTGACCGGGATCGCCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGTGTGTTGTTTGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTCTTCACTTCTGCCGTTGTGGCTGTTGTGGTTCGAGCTGCAATGGGGTGGTGCAAGAGTGGAAAATGTGGACATTTTGGGTCCGGTGGATTTATAATTTGGGATATATCAGATGGCCAAGAGGATTATTCCTTTGCAGAGTTATTTCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTAGGAGCTTTATTCAACCAGCTTACACTTTATATTACCACCTGGCGACGAAATTATCTTCACAAGAAAGGTAACAGGGTCAAGATTATTGAAGCATGTGTTATATCCATTTTAACGTCAGCCATTTCATTTGGCTTGCCACTTCTAAGAAAATGTAGTCCTTGCCCTGATTCTGATGCTACATCTGGTATTGAATGTCCTCGACCTCCTGGAATGTATGGGAATTATGTAAAT 1230 0.4358 MLANHFQNGIETARLVWSRIPNSDESQLLDDAVGILKKNDGGGVESLDYEVIENFAYREEQALRGKLYVSYLLVVKWFFALLIGICTGLAAVLINIAVENFAGWKFSVTFDIIQKSYIAGFVVYVLINLALVYSSVYIITQFAPAAAGSGIPEIKGYLNGVDTHGILLFRTLVGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHINSRWFQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNYLHKKGNRVKIIEACVISILTSAISFGLPLLRKCSPCPDSDATSGIECPRPPGMYGNYVN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0485 410 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0485 410 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0485 410 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0485 410 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 409 - -
Pvu2g0485 410 Pfam Voltage gated chloride channel 134 379 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0485 410 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 409 - -
Pvu2g0485 410 Gene3D Clc chloride channel 69 395 - -
Pvu2g0485 410 SUPERFAMILY Clc chloride channel 54 381 IPR014743 -
Pvu2g0485 410 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu2g0485 410 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu2g0485 410 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu2g0485 410 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0485 Pvu-Chr2 4355276 4359965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0485 1 410 Ion Channels AT5G26240 82.482 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0485 K05016 - gmx:100811908 775.393