Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0484 TTTTTTTGTAGCAAAGACAACGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCAGTGGTCACGTTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGCTCAATGCGGATCACAGTGTCTCTATGTGTCATTATGGTTGAAATCTCAAATAACTTAAAATTTTTACCTCTTATTATGCTTGTTCTTCTTATATCGAAGGCTGTTGGTGATGCTTTTAATGAAGGTATCTATGAGGAGCAGGCTCAATTGAGGGGCATTCCGTTACTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCCCGTGTTGTTAAGGTTTCAGATGTGGTCTCCATTCTACGGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGGTTAGTGCTTCGTAGTCATTTATTGGTAATTCTGCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCAGATTCTCGAGGTGGGGGCAGATCAATTAGGCATGATTCTGGTGAATTTGCAAAGCCTGTCTCTAGCAAAGGAATATGTATTGACGATATAAATCTAAGTTCAGATGACTTAGAAATGTACATTGATCTCGCTCCATTTCTGAATCCCTCACCGTATATTGTACCAGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGTCAACTTGGTCTAAGGCATTTATTTGTTGTTCCTCGACCATCTCGTGTGCTTGGTTTGATAACGAGAAAAGATTTGTTGATCGAGGACAAAGAAAATGTGAATACGTTAGAGCTTCAGTCAACTAGTGTAAGAATAGGGCATCAGTATAAAAGATTGACAAGGAATACAGACGTGGAGCGGCCTTTGCTAAACGGACTGCTCCAGAATCAGATACCTGACTAA 1173 0.399 FFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRITVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDSRGGGRSIRHDSGEFAKPVSSKGICIDDINLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDKENVNTLELQSTSVRIGHQYKRLTRNTDVERPLLNGLLQNQIPD* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0484 390 Pfam CBS domain 297 344 IPR000644 -
Pvu2g0484 390 Pfam CBS domain 193 236 IPR000644 -
Pvu2g0484 390 SUPERFAMILY CBS-domain pair 169 343 IPR046342 -
Pvu2g0484 390 CDD CBS_pair_voltage-gated_CLC_euk_bac 186 343 - -
Pvu2g0484 390 PRINTS Chloride channel signature 60 80 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0484 390 PRINTS Chloride channel signature 95 111 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0484 390 PRINTS Chloride channel signature 113 132 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0484 390 PRINTS Chloride channel signature 151 165 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0484 390 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 382 - -
Pvu2g0484 390 Pfam Voltage gated chloride channel 16 144 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu2g0484 390 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 1 382 - -
Pvu2g0484 390 SUPERFAMILY Clc chloride channel 17 166 IPR014743 -
Pvu2g0484 390 Gene3D Clc chloride channel 10 165 - -
Pvu2g0484 390 ProSiteProfiles CBS domain profile. 296 353 IPR000644 -
Pvu2g0484 390 SMART cbs_1 185 237 IPR000644 -
Pvu2g0484 390 SMART cbs_1 299 347 IPR000644 -
Pvu2g0484 390 Gene3D - 185 349 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0484 Pvu-Chr2 4343446 4348195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0484 1 361 Ion Channels AT5G26240 83.102 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0484 K05016 - gmx:100811908 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0484 2 4343446 4348195 Pvu2g0484 2 4343446 4348195 ECH