Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0479 ATGTTCTCAACTATCTTTCTCTCTTCCATTCTTGTACTACTTTCACTTCTGAATGGCTTCCATGCCACCATACAACCAAACACACACATCACTGCTGGATCAAACTCTACCTGGAAGTCACCCTCTGGTGATTTTGAATTTGGATTCCTCCATCTCCGCAGTGATCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCACAGAGAGAAAGCTGGTATGGTACAGAGCTCCCCCAATGGAACCAAATTCCCAAATCCAATTCACTTCTGCAGGACAACTTGTGGTAGTATACCCAAATGGGACTACTGCTCAGACCATACACGGTGGAGCAAACGGTGGGGCGGCAACATCTGCCACCATGCAAGACGATGGCAATTTTGTCATGAAGGACTCCAATTTAAGACATGTGTGGGAAAGTTTCAACTTTTCAGCCAACACAATCTTACCAGGCCAAACCTTGCAGACTAATCAAACCCTCTTTTCCAAGGGGAGAGGACCTTCAAACTACTCACAGGGAAATTTCATGCTATTGATGCAAAATGATGGCAACTTGTTGCTCCAAGCTCACCAATGGTCTGACCCAGCATACTGGTTTTCTTCAACCCTAACCTCCAATGTGAGGTTGGTTTTTAATGCTTCCACTGCTCTTATGTACCTTGTCAACGACACCGGGAAAATCTTCAATATGACCAAAACCACTCCAACCCCAGTGGAGGATTACTATCACCTTGCTACAATAGAAGAGAATGGGAATTTCCAACAATATGCATATCACAAGAGGAATGGCACAGAATGGAGCAGGGTTTGGAGAGCTGTGGAGGATCCCTGCAGAGTGAATGTTGTCTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAGTGAAGTGTGAGTGTATTCCAGGTTATATCCCATTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGCTGTCATCAATTACTGCGCAGAGACCAACTTCAATCTCCAGGTCTTAGACGATACTGATTTCAATTTTGATATTCGTCTGTTTAGTTTTGATAGTGTTGACTTGGAAAGTTGTAAGAAGGCTGTAAAAGATGATTGTAACATCGTTGCTGCAACTTACAACCATTCCACCTCCACATGTGTGAAGAAGAGACTGCCCTTACTGAATGCTAGAAACAGCTCTTCTTCAAAGGGAATGAAAGCACTGCTTAAAGTTGCTCATAGGGTTGAGTCTGGGACACCTAAACTTCCCAAGAAGAAAAGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTCTTGCAGTTACTGCCACTCTTGCTTGTTTCCTGGGTGCTCTTGCTGTCTACTATCATCCTTTCGCTCGGAGACTAACAAGAAGAAGGAAGCATCTGAATGCAACCGCTATTGGAATCAACTTCAGGGAATTCACCTTTCAGGAGCTGCATGAAGCAACAGAGGGATTCACTAGGATTCTTGGAAGGGGAGGTTCAGGAAAAGTCTATCGTGGTGGTTTAGTAATAGATGGTGTAGAGATTGGTATTGCAGTGAAGACACTGGAAAAGAAAATTGAGAAAAGTGAAAGTGAATTCATGACTGAGCTCAGAATTATTGGCCGTACCCATCACAGAAATTTGGTGAGGCTTTTGGGGTTTTGCTTTGAGAGTAGCCATCGAATTATAGTGTATGAGTTGATGCCAAATGGAGCACTCTCCAGATTTCTGTTTGGAGAGAGAGAAAGGCCTGAATGGGGTCAGAGGATTGAAATGGCTCTTGGAGTCGCAAGGGGGTTGCTATACTTGCATGAAGAGTGTGTGGTGTTTAGGCAACTAGAGCTAGTGGTGAGACATGACTCGGAAGTGTTGAATGATTTCAAGAGGTTTGAGGAAATGGCCTTGGTTGGCCTATGGTGTGTTCATCCAAATCCTGCTCTGAGACCTTCAATGAAGCACGTGATGCAGATGCTAGATGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTTATGAGCAGATGATGCCAGACCAAAGCCTAAGTTTGTCATTGCAATCCTAA 2046 0.4399 MFSTIFLSSILVLLSLLNGFHATIQPNTHITAGSNSTWKSPSGDFEFGFLHLRSDLFLVGIWFGRITERKLVWYRAPPMEPNSQIQFTSAGQLVVVYPNGTTAQTIHGGANGGAATSATMQDDGNFVMKDSNLRHVWESFNFSANTILPGQTLQTNQTLFSKGRGPSNYSQGNFMLLMQNDGNLLLQAHQWSDPAYWFSSTLTSNVRLVFNASTALMYLVNDTGKIFNMTKTTPTPVEDYYHLATIEENGNFQQYAYHKRNGTEWSRVWRAVEDPCRVNVVCGVYGLCTSPDNESVKCECIPGYIPLDDQDVSKGCHPPAVINYCAETNFNLQVLDDTDFNFDIRLFSFDSVDLESCKKAVKDDCNIVAATYNHSTSTCVKKRLPLLNARNSSSSKGMKALLKVAHRVESGTPKLPKKKSFNVRVFLKVLLAVTATLACFLGALAVYYHPFARRLTRRRKHLNATAIGINFREFTFQELHEATEGFTRILGRGGSGKVYRGGLVIDGVEIGIAVKTLEKKIEKSESEFMTELRIIGRTHHRNLVRLLGFCFESSHRIIVYELMPNGALSRFLFGERERPEWGQRIEMALGVARGLLYLHEECVVFRQLELVVRHDSEVLNDFKRFEEMALVGLWCVHPNPALRPSMKHVMQMLDGTVEVGVPPLVYEQMMPDQSLSLSLQS* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0479 681 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 202 IPR036426 -
Pvu2g0479 681 Pfam S-locus glycoprotein domain 239 306 IPR000858 GO:0048544
Pvu2g0479 681 Pfam Protein tyrosine and serine/threonine kinase 487 608 IPR001245 GO:0004672|GO:0006468
Pvu2g0479 681 Pfam D-mannose binding lectin 76 158 IPR001480 -
Pvu2g0479 681 Gene3D - 143 281 - -
Pvu2g0479 681 ProSiteProfiles Protein kinase domain profile. 484 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g0479 681 ProSitePatterns Protein kinases ATP-binding region signature. 490 515 IPR017441 GO:0005524
Pvu2g0479 681 Gene3D Transferase(Phosphotransferase) domain 1 563 611 - -
Pvu2g0479 681 ProSiteProfiles Bulb-type lectin domain profile. 23 141 IPR001480 -
Pvu2g0479 681 SMART blect_4 29 143 IPR001480 -
Pvu2g0479 681 Gene3D Phosphorylase Kinase; domain 1 458 562 - -
Pvu2g0479 681 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 602 - -
Pvu2g0479 681 PANTHER SERINE/THREONINE-PROTEIN KINASE 601 665 - -
Pvu2g0479 681 Gene3D - 15 142 IPR036426 -
Pvu2g0479 681 SUPERFAMILY Protein kinase-like (PK-like) 471 608 IPR011009 -
Pvu2g0479 681 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 602 - -
Pvu2g0479 681 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 601 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0479 Pvu-Chr2 4298996 4301436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0479 413 603 Receptor kinase-like Gene Family AT2G43700 35.751 7.24e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pvu2g0479 PK_Tyr_Ser-Thr 8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0479 - - pvu:PHAVU_002G046500g 1346.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0479 2 4298996 4301436 Pvu2g0479 2 4298996 4301436 ECH