Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0478 ATGTTGTGTCTGCCACTGTTGATCATCTTTCTCCTCCCTCTCAGAGGGGAATCAACGTGCCGCACAATCTCATGCGGCAAAATCAAAATTCACTTTCCGTTTGGTCTGAAACAAACTCCGATCGAAGCTACAATTTCTGGTCGGTGCAGCTATCCGAGGTTCCAGCTTTCCTGCGACAACCGCAACCGAACCATTCTGAGCCTCCCAGGTTCCGGAGATTTGGTGGTGAAAAGCATAAACTACGAGTCCCAAACTCTTACCGTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTCTTGCAGAACTTGAGCCTTTCCCTGCACCCACCGTTCACGTTTGAGGCAACCGTTTACGACCTAACGTTCCTTCGTTGTCCTTCCAACATGACACACTCCGTTGAATCTCCCCCAATTTCATGCCTCGATTCGAATTCCTCCTCCTCGGTGACATTCTCGTGGTGGCCTCTCAATGGCACGTTGCCGTGGAGTGAGGAGTGTGAGGTGATATCCTCGGCTTTTGTTCCCATTCCGAATCCAGACACGACATCGTTTTTCATGCCTGATCTCAACAAGGATGTCGTGTTAAAGTGGAACGAACCCGCGTGTGGGGATTGTGCTGGTCGTGGCCAAGTTTGTGGGTTCACCTCTCACACCAAAACTTTACAAGTAGGGTGCTTCTTCTATGCTCCTAACCAAAACCAAGGTCTTTCAAGAAGCGCCAAATATGGGTTAACGATCGGAGTGGGAATACCTGGGCTTTTATGTTTAACTGGGCTTTGCTGCTTTATGTGTAGTAAATTCGATGTGTACGCACATGGTAACCGGGCTAGGCCCACCAGAGAGCTTCCAAGCTCCATTACGACTCTTCCACGATCCTCGCCCACAGTGGGCCTTATTGGGCCGGAAATTGAAAAATTGCCCAAGACTCTTATTGGTGAGAGTGGGCGCTTACCGAATTGGAACGATAACACGTGTCCAATTTGTCTCTCTGAATACGAGCCCAAGGAGACGCTAAGGACCATTCCTGCGTGCAACCACTATTTTCATGCACACTGCATTGATGAGTGGCTGAAGATGAATGCCACGTGTCCCTTATGCAGAAATTCACCGGATCCATGTTCTACCGTTACCCCTTCTTCTTCTTCTTCTTTGCCATAG 1158 0.4931 MLCLPLLIIFLLPLRGESTCRTISCGKIKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQNLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDSNSSSSVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFFMPDLNKDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRNSPDPCSTVTPSSSSSLP* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0478 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 372 IPR013083 -
Pvu2g0478 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 378 - -
Pvu2g0478 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 378 - -
Pvu2g0478 385 SUPERFAMILY RING/U-box 319 371 - -
Pvu2g0478 385 SMART ring_2 325 366 IPR001841 -
Pvu2g0478 385 CDD RING-H2_PA-TM-RING 324 367 - -
Pvu2g0478 385 Pfam Wall-associated receptor kinase galacturonan-binding 20 90 IPR025287 GO:0030247
Pvu2g0478 385 Pfam Ring finger domain 323 367 IPR001841 -
Pvu2g0478 385 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0478 Pvu-Chr2 4291751 4294986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0478 20 372 C3H Transcription Factor Family AT2G46495 35.635 1.93e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0478 - - cam:101497311 359.377