Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0471 ATGGAATCAGGCGTGAGATCGGGTGGTTCTGGGGTTGTTGTGAAGAGCAGGAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGATTGGGTGCTACTGCTTCCTCGTCTAGGAAGCTCTATGAATCGAAGAAAAGGGCCAACATGAAAGTTTCCTTGAGTGATTCTGGATCAAGCGACGAGCTGCTGGTTCCTCCTGGTAGAAGGCTTGGTCCTGAGACTATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGGTAGTGGGGAAGGTATTGCTGCGGAGAAAGGTTTGGACCCGAGGGAAAGGAAGCGTAGTAAGTTGGATGTTTATGATTTTGATGAATATGATGGAATGGGTGTGGAAAACACAAGGAGGAGGCATTTAGATGATAATGGAGTTGGTCATGGAGGAGGAAGGTTTATGGGATCAGTGCATGCTGCTAGAGGTGGCATTGACAGGGAATTCAAAGCAGGGTCAAGTGGACGAGTTCTCGATAAGAAAAAGAACTCCTATGGTGACAGGCCTAGTGGCTTGTTTCCGGTGGATGATGTTGATCACAGTAGGTTCAAGATGAACAGGGATGGGACTCGGGTACCTATATCCTCGCAGAGGGAGAAGTTTAATTCAGATGAGTCCATCAGGGTTCAGGGGAAGAATGGCGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCGTGGGCCATCAGAACAGTATTATGATCATCACAAGCCTGTAGAAAGCAGACAAAGGTTGAAAACTGAAGAGCCTACCAAGAGGATAAAGACTGAAGAGACTGTCAAGAAGAATATTCCAAGTCGTCCTTCATCATACACGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGGCCAGAGAAGAAGCGGGTATCATCCAGAAAATCCTTGTCAAGCAAAGACAGTAAGGGTGATGAAGGGGATTCAGATAACAGTGATGCATCACTGAATCCGGGAATAAGAAATACTGAAACTCATAAGCCTGCAAAAGAAATAATTTCTGAGGATGAGCAGACACCTGTGCTCGAAAAACTCCCCACCGCAGGAACAAAAGATGGGAAAGTCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGAATGATGATGCTAAGGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTTACAAGGAAAACTAGAAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAAAATATGACAGTGAAAGTCGTAATGAAAAAGAGCCGCAAAGAAAGAGATCTGCCAGCAACAAGTGTGATATGAATAGCACAGATAGTGACAGCAATGAGGAGAAGTTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAGTAAAATGTCTGAAAATACCATTACCACTGCTCGCACTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCATTATTTGGAGGTGATCCTCATATACACGGAAGGAAGAGTAAAAAACATGGAAGATGTACCTTGCTAGTTCGCAGTTCTAATAAAGGATCAAATTCAGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAGTTAAGTCAAAAGGTTCAGTACCGCAGACGGAAAAAAGTCCTTCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTGGAATCTGGTGTTTCTCTTCTACAATGCCAAATAGATGCATGGAACAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGCAATGATCCAAACGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATTCAAATGCTTCCTGCTGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCTACTAGGACATCTGAAAAAGATGATGCATCTGTGTATGTCCTACGGACATGCAACTTATGTGAGAAGAAATATCATGACTCTTGCTCTGAGGAGATGGATACCAATCCTAATAGCTTGAATACTTCAAGCCTTTCTTTTTGTGGGAAAGAGTGTAAAGAGATTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACCCAGAGAGTTGAATGCAATTCAAAGTTGGCTATTGGACTGGCTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATACTGGATCAAACTTTAGCCGGTTGAGCTATGGTGGATTTTATGCTGCTATTTTGGAAAGAGGGGATGAAATAATTGCTGCAGCATCTATCAGGTTGCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACTCGCCATGTATATAGGTGCCAGGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGCCCTTTGCTCTCTCAAAGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACGATTTTTGGCTTCACACATCTAGACAATTCACTCAGGCAAGAAATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTTGAACAAGGAAAACGTGAGGGTTCTGAGAAAATGGGAAATGGAGGCAATGATTTTACCCCTATGAAAATGGAAAATCGGTCAGATATGGGTTCTTTAACTCCACAAGATGCTCATGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACGAATGATGAATGCAGTGATGCTTCTGAAGAACTAAACAACCATATTTTGGTTGAGGGGACTCTCTGTTCCAAATCTGATTCCGAGGAAATGGTGTCTGATTCAGTTTCAGATAAATGTATTTCTCATTCTAGAACTAGTCACAGTGCACTAGAAATGAAGAATAAAGTGGTGCCTGCTGCTCCTGTTGATAAATTAAGTTCTCCTTCGAAATGTCAGTCCATTTCTCCTAATGACAATTCTGAGAGTAGTCACTCAGAAGATATTCCAAACGTTCAAACTTTGGTTAAGGAAACTTCTTCTGATCCATGTTCACCAGAAAACCTTGACAAGAAATGTCACTCATTCACTGCTATGAATTGTGATTCGTCAGAGCTTGACATTAATCCAGTGTTGGGTTCTCAAAAGGCAGGCAATACTTCACCTACTAAAGAGGTTTGTATGAATGACTCTCTTGAAGCCGTTCCTTCAAGTAATTTACCGGAAGAGAATACTAGAAAGGGGGATGATCAAAATATAGATGACTCCAGATCTGCTCTCAAACTTGCTGATAAGAGTTTGTTGCAGGTAGAATCTGATTCCAAAAATGAAATTGGATGTGAAAATGAGAAGGATGTAAGTGCTGTAAATGCTTCTGGCGTTAGTTCTGAGACAGTTCTGGTCTAG 3864 0.419 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASSSRKLYESKKRANMKVSLSDSGSSDELLVPPGRRLGPETIRVCNGLAASERGGSEISRKRDRVERIRGSGEGIAAEKGLDPRERKRSKLDVYDFDEYDGMGVENTRRRHLDDNGVGHGGGRFMGSVHAARGGIDREFKAGSSGRVLDKKKNSYGDRPSGLFPVDDVDHSRFKMNRDGTRVPISSQREKFNSDESIRVQGKNGVLKVMVNKKKVRGPSEQYYDHHKPVESRQRLKTEEPTKRIKTEETVKKNIPSRPSSYTETKPVEKPRLVKRPEKKRVSSRKSLSSKDSKGDEGDSDNSDASLNPGIRNTETHKPAKEIISEDEQTPVLEKLPTAGTKDGKVKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDAKEVKAKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKKYDSESRNEKEPQRKRSASNKCDMNSTDSDSNEEKLSSFIKQGSKSMKSKMSENTITTARTKIQNATHHSSDGIEKSLFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPAGEWHCTNCTCKFCGIATRTSEKDDASVYVLRTCNLCEKKYHDSCSEEMDTNPNSLNTSSLSFCGKECKEISEHLKKYLGTKHELEAGFSWSLIHRTDEDSEAACRGITQRVECNSKLAIGLAVMDECFLPVVDRRSGINLIRNVLYNTGSNFSRLSYGGFYAAILERGDEIIAAASIRLHGTKIAEMPFIGTRHVYRCQGMCRRLFSAIESALCSLKVEKLVIPAIAELTHTWTTIFGFTHLDNSLRQEMKSLNMMVFPGIDMLQKLLVEQGKREGSEKMGNGGNDFTPMKMENRSDMGSLTPQDAHGSDDVSSNPANETNDECSDASEELNNHILVEGTLCSKSDSEEMVSDSVSDKCISHSRTSHSALEMKNKVVPAAPVDKLSSPSKCQSISPNDNSESSHSEDIPNVQTLVKETSSDPCSPENLDKKCHSFTAMNCDSSELDINPVLGSQKAGNTSPTKEVCMNDSLEAVPSSNLPEENTRKGDDQNIDDSRSALKLADKSLLQVESDSKNEIGCENEKDVSAVNASGVSSETVLV* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 1220 1242 - -
Pvu2g0471 1287 PANTHER PHD FINGER FAMILY PROTEIN 1 1247 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 474 537 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 88 121 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 551 579 - -
Pvu2g0471 1287 SMART PHD_3 715 756 IPR001965 -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 244 387 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 1133 1154 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 317 335 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 1127 1154 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 49 71 - -
Pvu2g0471 1287 Coils Coil 433 453 - -
Pvu2g0471 1287 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1247 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 248 287 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 484 505 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 1042 1069 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 349 363 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 1021 1074 - -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 506 537 - -
Pvu2g0471 1287 Pfam Tify domain binding domain 638 688 IPR032308 -
Pvu2g0471 1287 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Pvu2g0471 1287 Coils Coil 468 495 - -
Pvu2g0471 1287 SUPERFAMILY FYVE/PHD zinc finger 701 757 IPR011011 -
Pvu2g0471 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 810 IPR013083 -
Pvu2g0471 1287 Pfam PHD-finger 716 758 IPR019787 -
Pvu2g0471 1287 MobiDBLite consensus disorder prediction 90 121 - -
Pvu2g0471 1287 CDD PHD2_CHD_II 716 755 - -
Pvu2g0471 1287 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0471 Pvu-Chr2 4238272 4245844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0471 4 1016 PHD Transcription Factor Family AT4G14920 49.275 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu2g0471 TDBD 6.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0471 - - gmx:102666194 2011.11