Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0470 ATGGAATCAGAAGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAATTCCTCGGGTTGTTTGATTGTGCGAAAGAAAGGGGATGGGTTGGATGCTACTGCTTCCACCTCTAGGAAGTTCTATGAATCGAAGAAAAGGGCCAACATCAGTGTGCCTGTTAGTGATTCTGGATCAAGCGACGAGTTGCTGATTCCACCTGGTAGAAGGCTTGGGTCTGAGACTATTCGTGTTTGCAATGGTTTGGCTGCGTCTGAGAGGGTTGGGAGTGAGATTAGTAGGAAGAGGCACAGAATGGAACGAATTAGGGGTGCGGATAAAGGTTTGGAGCAGTGGGTGAATAAGCGTAGTAAGTTGGATGTGTACAATTTAGAAGAATATGATGGTATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTAATGCAGCTGGTTTTGGAGGAAGAAGTTTTATGGGGTCGGTTCATGCTACTAGGAGTGGCATTGATAGGGAATTGAAGAATGGGTCAAGTGGTCGTCTTGTTGATAAGCGGAAGAACTCTTATGTAGACAGGTCAAGTGGCTTGTTTCCTGGAGATAATCTTGATCGCATTAGGTTCAAGAGTAACAGAGATGGTGTTCGGGTACCTATACCCTTGCAGAGGGAGAAGTTTAATTCGGATGAGTCTATCAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGTGTGGGCAATCAGAACAGTACTACAATCATCACAAACCTTTGGAAAGCTGGCAAAGGTTGAAACCTGAAGAGCCCATCAAGAGGATGAAGATTGAAGAGACTGCCAAGAGGAATGTTCCAACTCGTCCTTCATCAAACCTGGAAACAAAACCTGTTGAGAAACCAGGAGTACTCAAGAGGGTGGAGAAGAAACAGATAGCATCAAGAAAATATTTGTCAAGCAAGGATGGCAAGGGTGATGAGGGGGGTTCAGATAACAGTGACACATCATTAAATCCCGGGGTAAGAAATACTGTAGCTCGTGAGCCTGTAAAAAAGATGTTCTCTGAGGATGAACAGACTCCTGTGCATGATAAACTCTCAAGCACAAAAGCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGAGAATACGGGAGATGCTGCTGACTTCAGGTTGGACCATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAATCCAGTAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGACGCCCTTCAAAAGCAATTGAATGAAGATGCTAATGAGGTCAAAGCCAAAGGGGATAGTGCTTCTTTTACACCTATTGCAGATGATGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAACAAGAAGAAAAAATATGACAGTGAAAGTGATAATGAAAAAGAGCCTGAAATAAGAAGATCTGCCAGCAACAAGAATGATATGAATAGCACTGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATTAAACAGGGAAGTAAGTCGATGAAAAATAAAATGTTTGAAAGTAACGTTATCAGTGCTCGCTCTAAAATCCAGAATGCTACCCATCACTCAGTTGACGGAATAGAAAAATCATCTGGATGTGATTCTCGTATACATGGACGGAAGAGTAATAAACACGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAAGATCAAATTCAGAATCTGATGGCTTTGTCCCATATACGGGAAAACGGACAGTTCTTGCCTGGTTGATCGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTTGAGGGGTGGATCACAAGAGATGGCATACATTGTGGCTGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATTTTTTTGGAATCTGGAGTTTCTCTTCTACAATGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTCTCCATTCAGTAGATACTGACGGTGATGATCGAAATGATGATACATGTGGTATTTGTGCAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAAAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGAATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGAACTTTCTGAAAAAGATGACGCATCAGTGTCTATCTTACATACATGCAACTTATGTGAGAAAAAATATCACGACTCTTGCGCTAATGAGATGGATGCCCTTCTTAATAACCTCAATACATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAGAGAGCTTTCTGAACAATTGAAGAAGTATATTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACGGATGAAGACTCAGAGGCAGCTTGCAAGGGAATTAATCAGAGGGTAGAATGTAATTCAAAATTGGCTATTGCACTGTCTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACATTTTATATAATAGTGGATCAAACTTTAATAGGTTGAGCTATGGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTTCTGCGGCATCTATCAGGTTCCATGGAACTGAGATAGCTGAGATGCCATTCATTGGAACTCGTCACATATATAGGCGTCAAGGGATGTGTCGCCGGCTTTTTTCTTCCATTGAATCGGCCCTTTGTGCTATGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACACATACATGGACAACAGTTTTTGGTTTCACACATCTGGACGAATTACTCAGACAAGAAATGAGGTCACTGAATATGGTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGTTAGTGGAAGGTTCTGAGAAAATGGGAAATGAAGACAACGATTTTATCCATACCAAAATGGGAAATAGGTCAGATATGGGTTCTTCAACTCCACAAGATCTTCGTGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACAAATGATGAATGCAGCGATGCTTCTCGAGAAATAAACCAAGTTTTGGTTGACGGGATTCTCTGTTCCAAATCTCATTCTGAGGAAATGGTCTCTGATTCAATTTCAGATAAATGTGTTTCTCCTTCTAGAACTAGTCACAGTGCTCTAGAAATGAAGAATAAAGTGCTGGCTCCTCCTCCTGTTGATAAATTAAATCCCACTTCTGTGAGAAGTCACCCAGAAGATATTCCAAATGTTCAAGCTTTGGCTCAGGAAACTGCTTGTTCTGATCCATGTTCAGCAGAAAACCTTGACAAGAAATGTCGCTTGGTCACTGCTATGAATTGTGATTCGCTGGAGCTTGACATTAATTCAGTTTTGAACTCTCAAAAGTCAGACAACACTCCACCTACCAAAGAGGCTTATATGAATGATGCTCTTGAAGCTGTTACTTCAGGGATTTTATCAGAAGAGAATATTATTCCAAAGGGAAGTAATCAAAATGTAGATGTCTCCATTTCTGCTCTCAATCATGACGACGAGAGTTTGTTGCAACTAGGATCTGGTTCCAACTCTGAAAACGGATGCAAAAATGGTAAGGATTTGCTTTTGAGCCCAATAGTTGCTTCAAATGAAACATGTGTGGATGAAAGTGGCGTAAATGCTTCCGGTGATAGTTCCGAGACTGTTGTGGTCTAA 3843 0.413 MESEVRSGGSGVVVKSRNSSGCLIVRKKGDGLDATASTSRKFYESKKRANISVPVSDSGSSDELLIPPGRRLGSETIRVCNGLAASERVGSEISRKRHRMERIRGADKGLEQWVNKRSKLDVYNLEEYDGMDVENMRRRHLDGNAAGFGGRSFMGSVHATRSGIDRELKNGSSGRLVDKRKNSYVDRSSGLFPGDNLDRIRFKSNRDGVRVPIPLQREKFNSDESIRVQGKNGVLKVMVNKKKVCGQSEQYYNHHKPLESWQRLKPEEPIKRMKIEETAKRNVPTRPSSNLETKPVEKPGVLKRVEKKQIASRKYLSSKDGKGDEGGSDNSDTSLNPGVRNTVAREPVKKMFSEDEQTPVHDKLSSTKAKEGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPVGTAYWSIIKAYDALQKQLNEDANEVKAKGDSASFTPIADDVLSQLTRKTRKKMEKELKNKKKKYDSESDNEKEPEIRRSASNKNDMNSTDSDNNEEKLSSFIKQGSKSMKNKMFESNVISARSKIQNATHHSVDGIEKSSGCDSRIHGRKSNKHGRCTLLVRSSNKRSNSESDGFVPYTGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQEHSEKIGLHSVDTDGDDRNDDTCGICADGGDLICCDGCPSTFHQSCLDIQMLPPGEWNCPNCTCKFCGIASELSEKDDASVSILHTCNLCEKKYHDSCANEMDALLNNLNTSSLSFCGKECRELSEQLKKYIGTKHELEAGFSWSLIHRTDEDSEAACKGINQRVECNSKLAIALSVMDECFLPVIDRRSGINLIRNILYNSGSNFNRLSYGGFYTAILERGDEIISAASIRFHGTEIAEMPFIGTRHIYRRQGMCRRLFSSIESALCAMKVEKLVIPAIAELTHTWTTVFGFTHLDELLRQEMRSLNMVVFPGIDMLQKLLVEGSEKMGNEDNDFIHTKMGNRSDMGSSTPQDLRGSDDVSSNPANETNDECSDASREINQVLVDGILCSKSHSEEMVSDSISDKCVSPSRTSHSALEMKNKVLAPPPVDKLNPTSVRSHPEDIPNVQALAQETACSDPCSAENLDKKCRLVTAMNCDSLELDINSVLNSQKSDNTPPTKEAYMNDALEAVTSGILSEENIIPKGSNQNVDVSISALNHDDESLLQLGSGSNSENGCKNGKDLLLSPIVASNETCVDESGVNASGDSSETVVV* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0470 1280 Coils Coil 427 447 - -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 469 499 - -
Pvu2g0470 1280 Pfam Tify domain binding domain 631 681 IPR032308 -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 1029 1057 - -
Pvu2g0470 1280 Coils Coil 462 489 - -
Pvu2g0470 1280 Pfam PHD-finger 709 751 IPR019787 -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 347 383 - -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 297 327 - -
Pvu2g0470 1280 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1201 - -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 500 518 - -
Pvu2g0470 1280 ProSiteProfiles Zinc finger PHD-type profile. 706 751 IPR019787 -
Pvu2g0470 1280 CDD PHD2_CHD_II 709 748 - -
Pvu2g0470 1280 ProSitePatterns Zinc finger PHD-type signature. 709 748 IPR019786 -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 274 383 - -
Pvu2g0470 1280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 806 IPR013083 -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 1020 1063 - -
Pvu2g0470 1280 MobiDBLite consensus disorder prediction 469 518 - -
Pvu2g0470 1280 PANTHER PHD FINGER FAMILY PROTEIN 1 1201 - -
Pvu2g0470 1280 SUPERFAMILY FYVE/PHD zinc finger 699 754 IPR011011 -
Pvu2g0470 1280 SMART PHD_3 750 808 IPR001965 -
Pvu2g0470 1280 SMART PHD_3 708 749 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0470 Pvu-Chr2 4221598 4228371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0470 6 1009 PHD Transcription Factor Family AT4G14920 48.745 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu2g0470 TDBD 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0470 - - gmx:102666194 1991.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0470 2 4221598 4228371 Pvu2g0470 2 4221598 4228371 ECH