Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0419 ATGGAGGGAGCATCCTGGAACACCACTGTTTCTGTCGCTCCGTTTCTCAGCAAAACCTACGACATGGTCGATGACCCATCAACCGATTCGGTCGTGTCCTGGGGCGAAAACAACAACACCTTTGTTGTCTGGAACGTCCCCCAATTCGCCACAGACATCTTGCCCAAACATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTTAGGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTTTAAAAAGTATCAGTAGGCGTAAATCTGCTCAAGTAAATGGTAGTCAACAACCATCTCAAGTGCAAAAATCATCTGTTAGAGCATGCGTCGAAGTGGGGAAATTTGGGCTCGAGGAAGAGGTGGAAATACTAAAAAGGGACAAGAACGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAATTGCAGAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCAGAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAAACATATCACTGGGGGTAGTAAAAAGAGGAGGCTCCACAGGCAAGAAAAGGATAATTTAGCCACCAACAGTCTCCATAGTGGTCTTGATGGACACGTAGTCAAGTACCAGAGTTCCATAAATGACGCTGCTAAATCTTTATTTCGCCAGATACTGCAAATAAACAATTCTACAGCAACACAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGATGATATTCCTTCTGCCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACGGTTCCTTCTGTTTCTGAGCTGACAAGCATGGAAGTAGACTCCCAGTTTCCTGTCAATTGTATGCCCAGTATATCCGAGGTGCAATCTCCATTGGATTTTTGTCAAAGTCAAGGGGTGGAGACAGAAAGCAGTTTAGTGAATCATAATCTGAATGATGTGGGGGCTGGTAGCAGGAACATGGGGGAGATAGATGTGCCATCTGTTTCGGATGGGCCGCACACTGTAGAAGCCGGTTATTCTTCACCCGATGCAGACGGAATTTCCCAACTCCCGGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACACAGAGGAAATTAAATTTAGCTCTCTAGGATGTGGTCTGACTGAAGACCATGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAAGCTTACTAAACAGATGGGACTTCTTGCTTCAAAGTCTTAA 1398 0.4399 MEGASWNTTVSVAPFLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDQWEFANEGFLRGEKQLLKSISRRKSAQVNGSQQPSQVQKSSVRACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESNKHITGGSKKRRLHRQEKDNLATNSLHSGLDGHVVKYQSSINDAAKSLFRQILQINNSTATQSSIKNPDVFLIDDIPSAIASDSSSSSTQVSNVTLSTVPSVSELTSMEVDSQFPVNCMPSISEVQSPLDFCQSQGVETESSLVNHNLNDVGAGSRNMGEIDVPSVSDGPHTVEAGYSSPDADGISQLPDIDDEFWELFFRPSPLTGDTEEIKFSSLGCGLTEDHGLPLERENEKKNVDKMQHVDKLTKQMGLLASKS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0419 465 Gene3D - 7 105 IPR036388 -
Pvu2g0419 465 Coils Coil 131 158 - -
Pvu2g0419 465 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0419 465 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Pvu2g0419 465 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0419 465 MobiDBLite consensus disorder prediction 355 391 - -
Pvu2g0419 465 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0419 465 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0419 465 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0419 465 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 8 433 - -
Pvu2g0419 465 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g0419 465 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 433 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0419 Pvu-Chr2 3867113 3870724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0419 11 465 HSF AT5G16820 52.452 4.07e-137 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu2g0419 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0419 K09419 - gmx:100793665 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0419 2 3867113 3870724 Pvu2g0419 2 3867113 3870724 ECH
Pvu2g0419 2 3867113 3870724 Pvu7g0632 7 5381401 5383424 PCT