Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0411 ATGGGAATACAAACCCAGAAAACATTTCGAGAGGAAGAGGAGGAAGAGCTGCCATGCCGTGGAACTACTATCTCAGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCAACACCGGCTAGTGATAACACCTTTCTTAGGTTGAATAATCTTGACATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGCACTGTTGGTGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCCAAGCAATGGTGCCTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTAAGTGATATTGAAGATCTAAAGACGGAACGTCAGGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAGCTGGAGGACCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGAGGTGTATCTTTACCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGATGACAAACCAGACAATCCTACAGATGGCGGGGAAGGTTCTAGCATGTCAAGTTTGTATCCTGCACAGGTTCCTAGTTCAGTTTCAAACCCTCCGACTAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1029 0.4344 MGIQTQKTFREEEEEELPCRGTTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVASKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKTERQGLRNRIEKKASYLQELEDQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDDKPDNPTDGGEGSSMSSLYPAQVPSSVSNPPTRPPSSPPLPGILKARVKNEH* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0411 342 Gene3D Transcription factor DP 179 313 IPR038168 -
Pvu2g0411 342 CDD DP_DD 178 281 IPR014889 -
Pvu2g0411 342 MobiDBLite consensus disorder prediction 299 316 - -
Pvu2g0411 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Pvu2g0411 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Pvu2g0411 342 SMART DP_2 180 340 IPR014889 -
Pvu2g0411 342 MobiDBLite consensus disorder prediction 21 58 - -
Pvu2g0411 342 Coils Coil 189 223 - -
Pvu2g0411 342 PANTHER TRANSCRIPTION FACTOR DP 22 342 IPR015648 GO:0005667|GO:0051726
Pvu2g0411 342 Gene3D - 85 178 IPR036388 -
Pvu2g0411 342 Pfam Transcription factor DP 181 294 IPR014889 -
Pvu2g0411 342 MobiDBLite consensus disorder prediction 317 331 - -
Pvu2g0411 342 PANTHER TRANSCRIPTION FACTOR DP 22 342 - -
Pvu2g0411 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Pvu2g0411 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Pvu2g0411 342 MobiDBLite consensus disorder prediction 287 342 - -
Pvu2g0411 342 SUPERFAMILY E2F-DP heterodimerization region 180 294 IPR037241 -
Pvu2g0411 342 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0411 Pvu-Chr2 3806830 3812706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0411 80 289 E2F-DP Transcription Factor Family AT5G02470 53.774 6.71e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pvu2g0411 DP 7.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0411 K04683 - gmx:100781272 567.77