Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0388 ATGGATGAGGGAAAGCATAGATCGAGGAAAGAAATTCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGACGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCACGAAAACCTGAAAGAGAGAGGAGTACTGATTCTGAAGAGAAGCATGATCGAGACAGGGAGAAGCGCAAAGATAAAGATAAGGATGTGGAGAGAGAAAGAGGTCGAGAGAAGAAAAGGGAAAGGGATAGGGAAGACAGGGAGAAGACAGACAGAGTAAAGGAAAAAGAGAAAGAGAGGGAAAGAAAAGAAGATAAGGAGAGGATTAGAGAGAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGCGAGGAGAGCACGAGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAGGAAGGAAGATGGTTATTACAAGAAGAGAGAGAGGGAAAGAAGCGTCAGCAAGCCAAGCAGGCAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGTTGGAGATGATTCAGATACCAAAGATGGAGAGATAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAGAAGAGGTTGGATGAAGAAATAGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTGAGAAGGAAGAAAGAAGAAGCAGAAAGAGAAAAGCATGGTGAAGTAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTAGAAGGGGAATCTGATGACGAAGAAGGACCGGGAACAGAGAAGCAAGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATATGGAACCTAAGGATGTGATGGAGGTAGACACGGATAATGGGACAATTGCATCTGATTTACAGGAGGGAACTGCTGGTACACCTGAAGATGATGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCAGTAATTTCTGATAAAGCCGTTGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCGTGGTACACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAGGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAAACCAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAACTTTTTATATTGAAGTGAAGGAGATGTCGAAGATGACTCCAGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAATTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCACCAGACTGGACTTGGTAGCAAAGTTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCTCTCCCTGTAATCATGAGTGGCCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGATACTAGGTCTCAGGTGCGTGCCTGTGTATGGAGGCTCCGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTTATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATTGCACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTTTTCTCTGCAACTTTCCCCCGCCAGGTTGAAATTCTGGCTCGGAAGGTTTTGAATAAACCTGTTGAAATTCAAGTTGGCGGGAGGAGTGTAGTGAACAAAGACATATTACAGCTAGTTGAGGTGAGACCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTACGAGAAAGGAAAGATCCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAGTTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTAGTGATCAATTTTGATGTTCCTAACCACTACGAAGATTATGTACACCGAGTTGGGCGCACTGGACGAGCTGGTCGAAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAATTATCTGAGCAGACTGTTCCCAATGATCTGAAAACTCTTGCTGATGGCTTTATGGCAAAGGTGAATCAAGGACTGGAGCAAGCCCACGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCCGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTTTTGCTCAGATTCTTGCTGCCACTAAAGTTAATGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCTAATGGAGGACTGCCTGTTTCTTTTCCGTCTGTACTTGGTCTCCAGACCCCCGCAGTCTTGCCTGGTACTGGGCTACCCCTTGCTGCAAATGATGGCGCAGCTCGAGCAGCTCTAGCTGCTATGAACTTGCATCGCAACATAGAAAAAATACAATCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACGCATAAGGAAACATTAGGCCCCATATCTGATTGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTCTTCCCACCTGGAAAAATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACCGAGCAGTCTGTTAAGACAGCTAAAGCACAATTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAAATCAACCGGGCAAATACTCTGTTGTATAA 3390 0.4422 MDEGKHRSRKEIHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRKPERERSTDSEEKHDRDREKRKDKDKDVERERGREKKRERDREDREKTDRVKEKEKERERKEDKERIRERERERRDHEREKEKERERARRAREREKRREVDSDYSDGESRERDRKRHRKEDGYYKKRERERSVSKPSRQSEEHEGSPRKKSVGDDSDTKDGEIKPTREEEMENEQKRLDEEIEKRRRRVQEWQELRRKKEEAEREKHGEVSANEPESGKTWTLEGESDDEEGPGTEKQDTGMDVDEDDKPADMEPKDVMEVDTDNGTIASDLQEGTAGTPEDDEIDPLDAFMNSMVLPEVEKLNNAVTSVISDKAVDIKAKDKGNEQSRGTQSRKGSNKSIGRIIPGEESDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEMSKMTPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLGSKVLETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKILGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQIARIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCSLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPAFAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPAVLPGTGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0388 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 872 IPR027417 -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 370 384 - -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 368 425 - -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 907 938 - -
Pvu2g0388 1129 CDD SF2_C_DEAD 712 842 - -
Pvu2g0388 1129 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 289 316 - -
Pvu2g0388 1129 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 164 911 - -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 907 921 - -
Pvu2g0388 1129 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 646 654 IPR000629 -
Pvu2g0388 1129 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 728 872 IPR001650 -
Pvu2g0388 1129 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 700 IPR014001 -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 1 268 - -
Pvu2g0388 1129 CDD DEADc_DDX46 480 701 - -
Pvu2g0388 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 702 IPR027417 -
Pvu2g0388 1129 SMART helicmild6 752 833 IPR001650 -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 1 345 - -
Pvu2g0388 1129 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 164 911 - -
Pvu2g0388 1129 MobiDBLite consensus disorder prediction 406 421 - -
Pvu2g0388 1129 Coils Coil 223 260 - -
Pvu2g0388 1129 Coils Coil 99 153 - -
Pvu2g0388 1129 Pfam DEAD/DEAH box helicase 516 687 IPR011545 GO:0003676|GO:0005524
Pvu2g0388 1129 Pfam Helicase conserved C-terminal domain 725 833 IPR001650 -
Pvu2g0388 1129 Gene3D - 443 700 IPR027417 -
Pvu2g0388 1129 SMART ultradead3 510 715 IPR014001 -
Pvu2g0388 1129 Gene3D - 701 875 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0388 Pvu-Chr2 3663450 3668769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0388 478 853 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 2.15e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0388 K12811 - gmx:100784306 1724.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0388 2 3663450 3668769 Pvu2g0388 2 3663450 3668769 ECH