Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0375 ATGGTCCTTTTTGGTGCGAGCAACCTCTCTGCATTGATGTTATGCTCCAGAAAGCTCGTGCGTTATGTGTTTTTCAAACGTTGTCTGTTGCGGAATCTTTGTACTTCAAGTGCAGAACCAGAAACCATAGCCACTAAAATTGATGCAAAGATACGTGCTCTTTCCACACAAGGCAACATTGAAGAAGCTCTTTCACTTCTTTACACCCATTGTTCTCTGTCCCTTCAAACCTGTGCCTCTCTGTTCCATGCTTGTGCTCAGAAAAAGTGCCTCCAACATGGCATGGCTCTGCACCATTACATGTTGCACAAAGACCCCACAATTCAAAATGACCTTTTTCTCGCCAATCACATCCTAAACATGTACTGCAAGTGTGGCCACTTATCCTATGCCCGCTACATGTTTGAACAAATGTCACGGAGAAACATTGTTTCTTGGACTGTTCTCATTTCCGGGTATGCTCAATCTGGCCTAATCAGAGAGTGTTTCTCTCTCTTCTCTGGCTTGCTGGCTCACTTTCGCCCCAACGAATTTGCTTTTGCGAGTTTGCTTAGCGCCTGTGAGGAGCATGACATTGAACGTGGCATACAGTTACATGCAGTTGCTTTGAAAATTTCTTTGGATGCCAATGTATATGTTGCAAATGCTCTTATTGCAATGTATAGCAAGCACTCTGGCTCCACCGGAGGTTATGATGGGGCAGCGGATGATGCGTGGACCATGTTCAAGTCAATGGAATATCGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTTCAACTTCGTGGACTTGGGGACAAAGCCATTCGCCTGTTTACACACATGTACTGCAATGGAATTGGGTTTGATCGTGCCACGCTGCTTAGTGTCTTTTCTTCACTGAATCAGTGTGGTGCTTTTGACGACATTAACGTGCATCTCCGGAAATGTTTTCAACTGCACTGTCTGACTGTTAAAAGCGGTTTTATTACAGAAATTGAAGTGATAACTGCATTGATAAAATCCTATGCAAATCTTGGAGGACACATTTCTGACTGTTACAGGATCTTCCTTGATACAAGTAGCGAACTGGATATTGTATCATGGACTGCTCTTATTTCTGTGTTTGCAGAACGGGATCCTGAGCAGGCTTTCCTCCTTTTTTGTCAGCTTCATCATCAAAATTATTTGCCCGACTGGTATACATTCTCAATTGCCTTAAAAGCTTGTGCATATTTTGTGACTGAGCAACATGCCATGGCTGTTCACTCACAAATAATTAAAAAGGGATTTCAGGAAGATACTGTTCTTTGTAATGCCTTGATACATGCTTATGCGAGGTGTGGCTCGTTAGCTTTGTCTGAACAAGTATTTGATGAAATGGGCAACCGTGATTTGGTTTCTTGGAATTCAATGCTGAAGTCTCATGCCATACATGGGAAAGCTAAAGATGCACTGGAGCTCTTCCAGCGAATGGAAGTCTGTCCAGATTCAGCTACCTTCGTTGCACTTCTCTCAGCTTGCAGTCACGTTGGACTAGTTGATGAAGGAGTGAAATTGTTTAACTCTATGTCTGATGATCACTGTATCGTTCCTCAACTAGATCACTATTCTTGCATGGTTGACCTTTATGGACGAGCTGGAAAGATAGTTGAGGCTGAGGAGTTGATACGTAAAATGCCAATGAAACCAGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGGAAACATGGTGAGACCCTCTTAGCCAAATTAGCAGCTGATAAATTTAAGGAGTTAGAACCAAACAATTCATTGGGGTATGTGCAAATGTCAAACGTATATTCCTCTGCCGGTAGTTTTACAGAAGCTTGTTTGATTAGGAAGGAAATGAGTAACTATAAAGTAAGAAAAGAACCAGGATTAAGCTTGGTTAAGATTGGGAAGCAGGTTCATGAATTTGGCTCTGGTGCTCAATACCATCCGCATAAAGAGGCCATATTAAGCCAGCTTGAGATATTGATTGGAAAATTGAAAGAGATGGGTTATGTGCCAGAACTGAGCTTAGCCTTATATGACACCGAAGTGGAGCACAAAGAAGACCAGTTGCTTCATCACAGTGAGAAGATGGCGTTGGTATTTGCCATAATGAATGAGGGAAGTTTGCCTTGTGGTGAGAAGGTCATTAAAATAATGAAGAATATTCGTATTTGTGTGGACTGCCACAACTTCATGAAATTAGCATCATATCTATTTCAGAAGGAGATTGTTGTTCGAGATTCAAACCGCTTTCACCACTTCAAATATGCAACATGCTCTTGTAATGACTTTTGGTAA 2304 0.4171 MVLFGASNLSALMLCSRKLVRYVFFKRCLLRNLCTSSAEPETIATKIDAKIRALSTQGNIEEALSLLYTHCSLSLQTCASLFHACAQKKCLQHGMALHHYMLHKDPTIQNDLFLANHILNMYCKCGHLSYARYMFEQMSRRNIVSWTVLISGYAQSGLIRECFSLFSGLLAHFRPNEFAFASLLSACEEHDIERGIQLHAVALKISLDANVYVANALIAMYSKHSGSTGGYDGAADDAWTMFKSMEYRNLISWNSMIAGFQLRGLGDKAIRLFTHMYCNGIGFDRATLLSVFSSLNQCGAFDDINVHLRKCFQLHCLTVKSGFITEIEVITALIKSYANLGGHISDCYRIFLDTSSELDIVSWTALISVFAERDPEQAFLLFCQLHHQNYLPDWYTFSIALKACAYFVTEQHAMAVHSQIIKKGFQEDTVLCNALIHAYARCGSLALSEQVFDEMGNRDLVSWNSMLKSHAIHGKAKDALELFQRMEVCPDSATFVALLSACSHVGLVDEGVKLFNSMSDDHCIVPQLDHYSCMVDLYGRAGKIVEAEELIRKMPMKPDSVIWSSLLGSCRKHGETLLAKLAADKFKELEPNNSLGYVQMSNVYSSAGSFTEACLIRKEMSNYKVRKEPGLSLVKIGKQVHEFGSGAQYHPHKEAILSQLEILIGKLKEMGYVPELSLALYDTEVEHKEDQLLHHSEKMALVFAIMNEGSLPCGEKVIKIMKNIRICVDCHNFMKLASYLFQKEIVVRDSNRFHHFKYATCSCNDFW* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0375 767 Pfam PPR repeat family 359 405 IPR002885 -
Pvu2g0375 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 128 301 - -
Pvu2g0375 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 312 385 - -
Pvu2g0375 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 431 761 - -
Pvu2g0375 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 375 470 - -
Pvu2g0375 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 188 - -
Pvu2g0375 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Pvu2g0375 767 Gene3D Tetratricopeptide repeat domain 500 629 IPR011990 GO:0005515
Pvu2g0375 767 Gene3D Tetratricopeptide repeat domain 190 306 IPR011990 GO:0005515
Pvu2g0375 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Pvu2g0375 767 Pfam DYW family of nucleic acid deaminases 671 767 IPR032867 GO:0008270
Pvu2g0375 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Pvu2g0375 767 Pfam E motif 575 634 IPR046848 -
Pvu2g0375 767 Pfam Pentatricopeptide repeat domain 422 455 IPR002885 -
Pvu2g0375 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Pvu2g0375 767 Gene3D Tetratricopeptide repeat domain 44 189 IPR011990 GO:0005515
Pvu2g0375 767 Gene3D Tetratricopeptide repeat domain 372 499 IPR011990 GO:0005515
Pvu2g0375 767 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Pvu2g0375 767 TIGRFAM PPR: pentatricopeptide repeat domain 116 144 IPR002885 -
Pvu2g0375 767 TIGRFAM PPR: pentatricopeptide repeat domain 494 523 IPR002885 -
Pvu2g0375 767 TIGRFAM PPR: pentatricopeptide repeat domain 251 282 IPR002885 -
Pvu2g0375 767 TIGRFAM PPR: pentatricopeptide repeat domain 430 460 IPR002885 -
Pvu2g0375 767 TIGRFAM PPR: pentatricopeptide repeat domain 531 554 IPR002885 -
Pvu2g0375 767 Pfam PPR repeat 144 167 IPR002885 -
Pvu2g0375 767 Pfam PPR repeat 251 281 IPR002885 -
Pvu2g0375 767 Pfam PPR repeat 461 487 IPR002885 -
Pvu2g0375 767 Pfam PPR repeat 116 143 IPR002885 -
Pvu2g0375 767 Pfam PPR repeat 494 522 IPR002885 -
Pvu2g0375 767 Pfam PPR repeat 530 555 IPR002885 -
Pvu2g0375 767 PANTHER - 49 188 - -
Pvu2g0375 767 PANTHER - 431 761 - -
Pvu2g0375 767 PANTHER - 128 301 - -
Pvu2g0375 767 PANTHER - 375 470 - -
Pvu2g0375 767 PANTHER - 312 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0375 Pvu-Chr2 3595823 3598323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0375 79 767 Glycoside Hydrolase AT3G49170 35.704 1.84e-132 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0375 - - gmx:100799117 1400.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0375 2 3595823 3598323 Pvu7g0642 7 5479953 5487986 PCT