Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0359 ATGAGTAAGACTTCAGCTTTGAATGCAACAAGTTCAAGCAGGGAAAACAAGTTCAAGGGTGTTCGCCGGCGCAAATGGGGCAAGTGGGTGTCGGAGATTCGTGTTCCGGGGACGCAAGAGCGTCTCTGGCTGGGAACCTACGCCACGCCGGAGGCGGCGGCGGTGGCTCACGACGTCGCCGTGTACTGTCTGAGGAGGCCTTCTTCGTTGGACAAACTTAACTTACCCGAGACCTTGTCTTCCTACAGTGGTCAGCTGAGGGAGATGTCTCCGAGGTCTGTTCAGAAGGTGGCTTCGGATGTTGGAATGGATGTTGACGCCAGAAACATTTCTGAGGGAAGAGTTTCATCTGGGGTGGCACAAAGTGAGGAGAGTGAGAAGAAAATGGAGGTTGCTGTTAGAGCAGGTGGTGATGATTCTGATGAGTTTTGGTGGGATGGTTTGGAGGGTGATGATTCTGGGACTTGGAATGGAAGTGGTGAAGATTGTACAGAAAGAGTTAGCTTGAACGTTTCCATTGAAGATTATCTTTAG 534 0.5094 MSKTSALNATSSSRENKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSSLDKLNLPETLSSYSGQLREMSPRSVQKVASDVGMDVDARNISEGRVSSGVAQSEESEKKMEVAVRAGGDDSDEFWWDGLEGDDSGTWNGSGEDCTERVSLNVSIEDYL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0359 177 Gene3D AP2/ERF domain 16 77 IPR036955 GO:0003700|GO:0006355
Pvu2g0359 177 MobiDBLite consensus disorder prediction 1 15 - -
Pvu2g0359 177 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Pvu2g0359 177 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Pvu2g0359 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 5 130 - -
Pvu2g0359 177 MobiDBLite consensus disorder prediction 1 23 - -
Pvu2g0359 177 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Pvu2g0359 177 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Pvu2g0359 177 MobiDBLite consensus disorder prediction 121 141 - -
Pvu2g0359 177 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Pvu2g0359 177 SUPERFAMILY DNA-binding domain 17 69 IPR016177 GO:0003677
Pvu2g0359 177 MobiDBLite consensus disorder prediction 110 161 - -
Pvu2g0359 177 CDD AP2 17 51 IPR001471 GO:0003700|GO:0006355
Pvu2g0359 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0359 Pvu-Chr2 3499002 3499535 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0359 10 107 AP2-EREBP Transcription Factor Family AT1G71520 61.000 6.47e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu2g0359 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0359 - - gmx:100816257 238.039