Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0323 ATGTCGTTGAAAAGCATAGTAAGAGAACTAAAGGAGATGAGAGATGGGATTGGAAGCATGTCTAGGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGGACAAAGTCACATGTTGCTCCAGAAATCACTTTAACTTCACTTGAACCTATTCAGCAAGGGCAGTGGGCGAATTTACCCCCTGAATTGATTCTGGACATAATAAGTAGAGTGGAAGAGAGTGAGACTAGCTGGCCTGCACGTGCCGTAGTTGTTCATTGTGGTTCTGTTTGTAAATCGTGGAGGGATGTTACGAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGCCCTCGTGACTCTCCAATACAGTGCTTTATCAGGAGGAACCGAGAAACTTCTACATATCTATTGTACATTGGCCTGGTACCATCGGAGAATGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGCACAGACTTTGTTGTGTCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCAGAAGGAGCTGCAATTCAACAAGATACTCAGTCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTTTCAGCATTTAACCATGTTGTTAGCACCATTGCATATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATATCTATCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACATCTTTCCCTCAAATCATTGACAAGCCTTTTTCTCCCTCACCAGTACTAAAAGGAAAAGGTCCAAGTACAGATTTAAATGATGTAAACCTCCCTAAGATACCAGTACCTAGCCAAGGCTCAGCTGAGCCCATGGTACTAAAAAACAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTCACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCAGCTGTCGATCCTTCCCATAATGTTTCTGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGCCTTAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1245 0.4418 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPEITLTSLEPIQQGQWANLPPELILDIISRVEESETSWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFVVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPEGAAIQQDTQSSRRFHSKQVSPRVSAFNHVVSTIAYELNVLRARGPRRMHCTMNSISISAIQEGGTAPTPTSFPQIIDKPFSPSPVLKGKGPSTDLNDVNLPKIPVPSQGSAEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0323 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Pvu2g0323 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Pvu2g0323 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Pvu2g0323 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Pvu2g0323 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
Pvu2g0323 414 PANTHER TUBBY-RELATED 1 414 - -
Pvu2g0323 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Pvu2g0323 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Pvu2g0323 414 Gene3D - 48 104 - -
Pvu2g0323 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Pvu2g0323 414 Pfam Tub family 116 409 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0323 Pvu-Chr2 3241253 3244349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0323 1 414 TUB Transcription Factor Family AT2G18280 63.133 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu2g0323 Tub 2e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0323 K19600 - gmx:100798958 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0323 2 3241253 3244349 Pvu2g0323 2 3241253 3244349 ECH
Pvu3g2624 3 48269501 48277609 Pvu2g0323 2 3241253 3244349 ECH
Pvu2g0323 2 3241253 3244349 Pvu3g2624 3 48269501 48277609 PCT