Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0318 ATGGAAATGGAAGGGCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCCCAACAGAGATTCTTCTTCTTCCTCTTCTAAGCTCTCTTCTCCAACAGTTGGTGAAAGAAGTACCACTCATCATGATCATGGTCATGATCATGGTGATCATGATCATGGTCATGATCAACTTCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGAACCGCCTCACCATAATCTCTATCAACCACCTCCTCCTCTTGCACCTCGTCAACCTCATAGACTCACACCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCTAATCCTCTAAGAACAGCACACCCTCAGACAACAACAATAGCAGCAGCAGCAGCAACAACAACCACCTCAACCCCGTCGATCAGATACCGAGAATGTCTTCGGAACCACGCCGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGTACGCCGGAATCACTAAGATGCGCCGCGTGTGAGTGCCACCGCAACTTCCACAGGAAAGAGGTTGAGGGAGAGTTACAGCCACAGCAACCACCGCCACTGTCACTACTACCACAACAACAACAGCAACAACATGCTCCCAATTATCACAGCTACTACCCGAACAACCACAATGGACACCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCACCATAGATTGGTTGGCAGCAGTGGTACACCAAGTTTGGTCCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGTCCAACACTGGAGGAGCACATGCACAGTTGTCAGTGCAGGCGCCAGTTTCTTCCAAGAAGAGGTTTAGGACTAAGTTCTCCAAGCAGCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAACACTTTTGTTCTCAAGCGGGCGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1062 0.4831 MEMEGQDKEIEIPTSLGYNLPNRDSSSSSSKLSSPTVGERSTTHHDHGHDHGDHDHGHDQLHQPPHQTHTLIFNEPPHHNLYQPPPPLAPRQPHRLTPDPDLSTPIAPTSNPLRTAHPQTTTIAAAAATTTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELQPQQPPPLSLLPQQQQQQHAPNYHSYYPNNHNGHLHYPTPSPSSLHHRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAHAQLSVQAPVSSKKRFRTKFSKQQKDRMMEFAEKIGWKIQKHNEQEVQHFCSQAGVKRQVFKVWMHNNKKHPM* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0318 353 Gene3D - 280 352 - -
Pvu2g0318 353 MobiDBLite consensus disorder prediction 189 247 - -
Pvu2g0318 353 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 293 350 IPR006455 -
Pvu2g0318 353 SUPERFAMILY Homeodomain-like 286 349 IPR009057 -
Pvu2g0318 353 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 66 350 - -
Pvu2g0318 353 MobiDBLite consensus disorder prediction 203 244 - -
Pvu2g0318 353 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 66 350 - -
Pvu2g0318 353 MobiDBLite consensus disorder prediction 1 115 - -
Pvu2g0318 353 MobiDBLite consensus disorder prediction 18 39 - -
Pvu2g0318 353 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 139 188 IPR006456 -
Pvu2g0318 353 MobiDBLite consensus disorder prediction 40 63 - -
Pvu2g0318 353 MobiDBLite consensus disorder prediction 79 94 - -
Pvu2g0318 353 Pfam ZF-HD protein dimerisation region 137 189 IPR006456 -
Pvu2g0318 353 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 138 189 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0318 Pvu-Chr2 3203515 3206218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0318 103 350 ZF-HD Transcription Factor Family AT2G18350 46.640 2.60e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu2g0318 ZF-HD_dimer 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0318 - - vra:106776405 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0318 2 3203515 3206218 Pvu2g0318 2 3203515 3206218 ECH
Pvu3g2617 3 48220277 48221900 Pvu2g0318 2 3203515 3206218 ECH
Pvu2g0318 2 3203515 3206218 Pvu3g2617 3 48220277 48221900 PCT