Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0316 ATGCATCGCTGTTGCAGTGGCTCCCAGGGGCACGTCATGGGACACTGTACATGCGGCATGTTCCACAGCCAAACCACCTCCTTCTCCATGCTCTTCTCACTGCCCAACCACAAGCCACCCTACCAAGATTCCGACATCTATGATTATTCCTTCACCCCCTCATCCTCTTCCTCTTCCGTTGACTGCACTCTCTCCCTCGGGACTCCATCCACCCGTTTCTCCGAAGACGAGGAAAAACGTACCCGCCACGAACGTCGCTCGGTTTCTAACTTCTGCTGGGACTTACTACAATCCAAACACAGCCCTCAATCCCAAACCAAATCCTCCCGAACCTCCAATACCACCTCAAACACCGACCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCACTGTGCAATGCATGTGGGATTAGATTCAAGAAGGAGGAGAGAAGGGCGAGTGCGGCGGCTGCGCCGCCGCCGGCTTCTGGCGGCTTGATGGAATCGGCGCAGGTGTACAACAACTCGTGGTACACGCACCCGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGCGAGCGAGTTCCGTTTCGCGGACGACGAGAATCGAGACGCCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCACAGACAGAACGAGCCTCGTTCACGACTTCACAAGATGA 726 0.5647 MHRCCSGSQGHVMGHCTCGMFHSQTTSFSMLFSLPNHKPPYQDSDIYDYSFTPSSSSSSVDCTLSLGTPSTRFSEDEEKRTRHERRSVSNFCWDLLQSKHSPQSQTKSSRTSNTTSNTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPPASGGLMESAQVYNNSWYTHPQSQKMQCFSPGMASEFRFADDENRDADNGIPFLSWRLNVTDRTSLVHDFTR* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0316 241 PANTHER GATA TRANSCRIPTION FACTOR 18 1 240 - -
Pvu2g0316 241 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Pvu2g0316 241 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Pvu2g0316 241 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Pvu2g0316 241 Gene3D - 122 177 IPR013088 GO:0006355|GO:0008270
Pvu2g0316 241 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Pvu2g0316 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 162 - -
Pvu2g0316 241 MobiDBLite consensus disorder prediction 99 120 - -
Pvu2g0316 241 PANTHER GATA TRANSCRIPTION FACTOR 18 1 240 IPR044272 GO:0003700|GO:0009908
Pvu2g0316 241 SMART GATA_3 120 174 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0316 Pvu-Chr2 3173297 3175069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0316 17 241 C2C2-Gata Transcription Factor Family AT3G50870 43.403 5.95e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu2g0316 GATA 5.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0316 - - gmx:100790571 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0316 2 3173297 3175069 Pvu2g0316 2 3173297 3175069 ECH
Pvu2g0316 2 3173297 3175069 Pvu3g2613 3 48168593 48170822 PCT