Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0303 ATGGAGATGAAGGACAAAGTGAATAATGAGGATCTTGCTGTGGAGTCTCCAACTTCGGTTCTCGAAGACGAGGATGTTTGTGCCCCCAAAGACGAGGTTAAGTTGGAAGAAGAGTTAATTGCTGATGTGAAAGACGATGGCTCGTCTATTGTATCGAAGACTATGGCAGAGGAGGAAGAGAAGTTACTTAAAGCTAGGATTAAGGAAGAGGAGGTGCAGTGTGGGGAGGCACCTGACCTCAGCGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAACTGTACTCTGAGTTTTTGCTGGAGAAAATGGATGACATCGCACTTACTGTGGATGAACAAGTGAAAGTGGAAGAGCTAGAGAGTAATCCTTCTGCAAAGAGGGGACGTGGATCGAAGAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAGAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTGTAGATATGAAAATGACCGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGGGGGAAATTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCGGATCAAATGGGTCTTGGAAAGACAATCCAAACGATTGGATTTCTCTCTCATCTAAAAGCAAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGATGAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCCATTGTCTACCATGGTGGCAAGAAGGAGAGAGATGAGATCCGAAGGAAACATATGCCTACTAAAACAATTGGCCCAAAATTTCCCATAGTCATAACTTCTTACGAGGTTGCATTAAATGACGCTAAGAAATATTTCAGGTCATACAATTGGAAATATCTCGTTGTTGATGAGGGACACAGGCTCAAAAATTCAAAATGCAAATTAGTGAAGGAGTTGAAATACATAAAAGTTGAAAACAAGATTCTTCTAACTGGAACTCCTCTTCAGAATAACCTGGCCGAATTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGCGAAGGGCAATAATGAAGCAACCAAGGAAGAACTGGAAGAGAAACGGAGATCCCAAGTAGTGGCAAAACTTCATGCTATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCAAAGAAAAAAGAGATTATTATCTATGCAAACATGACGGATCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAGAAGGAAAGATGTCAAGCGGACGCCCTGTTCCTGGAGGTACGATTCGTAATTTGGTTATTCAGCTTAGGAAAGTGTGTAACCATCCTGATCTTCTAGAATCAGCTTATGATGATACATCTTGCTATCCTCCTTTAAATGAGATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGGAACGTTTATTTGCAAGGAATCACAAAGTTCTTATCTTCAGTCAATGGACTAAAGTGTTGGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGAGAGGAAACGACAGATCGAGGACTTCAACGATGCAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATGTCTACCGGCTCTCAACTGCTCAATCTATAGAGGATCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATTGGGAAAGGACAGTTTCATCAAGAACGTACAAAAACTGTCAATAGGGATGACATAGAGGAAGAGGATTTTTTGGCATTGCTTCGTGACGAAGAAACAGCCGAAGATAAAATGATTCGAACAGATATTAGTGATGAAGACCTGGAGAAGGTCTTGGATCGCAGTGATCTTATTATCGTCAACAACTCAGACGATGGTAACTCGAAACCTCCATGCAGTACCATTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGATTCCAAATGCGGGTGGAGGCATGCTCTCTACTCTCAACAGCTAG 2292 0.4171 MEMKDKVNNEDLAVESPTSVLEDEDVCAPKDEVKLEEELIADVKDDGSSIVSKTMAEEEEKLLKARIKEEEVQCGEAPDLSDTQFNKLDELLTQTKLYSEFLLEKMDDIALTVDEQVKVEELESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTVDMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWMNEISRFAPSLPAIVYHGGKKERDEIRRKHMPTKTIGPKFPIVITSYEVALNDAKKYFRSYNWKYLVVDEGHRLKNSKCKLVKELKYIKVENKILLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPKKKEIIIYANMTDHQKNLQDHLVNKTLGNYLEGKMSSGRPVPGGTIRNLVIQLRKVCNHPDLLESAYDDTSCYPPLNEIVEQCGKFHLLDRLVERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDERKRQIEDFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERTKTVNRDDIEEEDFLALLRDEETAEDKMIRTDISDEDLEKVLDRSDLIIVNNSDDGNSKPPCSTIPLKGPGWEVVIPNAGGGMLSTLNS* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0303 763 Coils Coil 53 73 - -
Pvu2g0303 763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 372 IPR014001 -
Pvu2g0303 763 PANTHER BNAC07G16550D PROTEIN 7 762 - -
Pvu2g0303 763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 683 IPR001650 -
Pvu2g0303 763 CDD DEXHc_HELLS_SMARCA6 188 424 IPR044753 GO:0005524
Pvu2g0303 763 PANTHER SNF2/RAD54 HELICASE FAMILY 7 762 - -
Pvu2g0303 763 SMART ultradead3 187 383 IPR014001 -
Pvu2g0303 763 MobiDBLite consensus disorder prediction 122 142 - -
Pvu2g0303 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 716 IPR027417 -
Pvu2g0303 763 MobiDBLite consensus disorder prediction 1 24 - -
Pvu2g0303 763 Gene3D - 159 421 IPR038718 -
Pvu2g0303 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 422 IPR027417 -
Pvu2g0303 763 Gene3D - 428 728 IPR027417 -
Pvu2g0303 763 CDD SF2_C_SNF 506 640 - -
Pvu2g0303 763 Pfam Helicase conserved C-terminal domain 523 630 IPR001650 -
Pvu2g0303 763 Pfam SNF2-related domain 194 494 IPR000330 GO:0005524|GO:0140658
Pvu2g0303 763 SMART helicmild6 546 630 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0303 Pvu-Chr2 3063228 3069240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0303 177 651 RAD5 or RAD16-like Gene Family AT3G16600 23.966 5.96e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu2g0303 SNF2_N 1.7e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0303 K19001 - gmx:100777687 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0303 2 3063228 3069240 Pvu2g0303 2 3063228 3069240 ECH