Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0301 ATGGGAGACTTCAACAACAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCTCGCACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACTTGCTGAAGCTATTCGAACCTAGGCCTCCCTTGGAGTACAAACCGCCGCCGGAGAAACGGAAATGTCCGCCGTTGACAGGGATGGCACAATTTGTGACCAAATTTGCCGAGCCTGGGGATCCAGAATATTCGCCACCTATTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCACAGAATGATCCAAATGTATCTGGGGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTATAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGAGAAGAAGTTAATCAGCGACACTCTGGGAGGGAGCAACAGCAGTCTCGTTCTGAAGAACCAAGAGCGCGAGAGGACCGGCATAATGATAGAGACAGGGAAATATCACGTGAAAAAGGTAGGGATAGAGACAGAGAACGGGAGCGATCACGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGACTATAGAGAGGATAGACACCACAGGGACCGAGACAGGACAAGGGACAGAGACAGGGAAAGAGATAGAGACCGTGGACGTGATCGAGATAGGGCACGGGATCGTGACAGGGATAGAGACCGTGATCGACATCGTGAAAGGGATAGAGATTATGAAGTTGGGGACACTGATCGACGTTCACGTGATAGGGAGTCTGAATATGAACGGGTTGAATCTAAACAGGAGAGGGACCAACATGGTGAAAGGAATCGGGACTATGAGCCTGAGGATGATCGTGGTAGGCATAACCAGTATGAGCATGGACGTCGACATGCTGACCCTGATCATGACCCTGAGCAGTATGACCACTACCATCATGGAGATGATCGTGGTGATCATTATAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGCAGGACGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGAATATCGTCGCTCGGAGAGATCTCATTCCCGGGAGTATGACTACTAG 1437 0.4843 MGDFNNNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVTKFAEPGDPEYSPPIPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRAREDRHNDRDREISREKGRDRDRERERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYEVGDTDRRSRDRESEYERVESKQERDQHGERNRDYEPEDDRGRHNQYEHGRRHADPDHDPEQYDHYHHGDDRGDHYNQYHDHDRMEDDYHAGRATSESHEKEKSHGTDREYRRSERSHSREYDY* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0301 478 MobiDBLite consensus disorder prediction 246 478 - -
Pvu2g0301 478 PANTHER - 1 355 - -
Pvu2g0301 478 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 355 - -
Pvu2g0301 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Pvu2g0301 478 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 46 134 IPR022023 -
Pvu2g0301 478 MobiDBLite consensus disorder prediction 225 478 - -
Pvu2g0301 478 SMART rrm1_1 144 217 IPR000504 GO:0003723
Pvu2g0301 478 CDD RRM_snRNP70 142 232 IPR034143 GO:0030619
Pvu2g0301 478 SUPERFAMILY RNA-binding domain, RBD 131 243 IPR035979 GO:0003676
Pvu2g0301 478 MobiDBLite consensus disorder prediction 86 106 - -
Pvu2g0301 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Pvu2g0301 478 Gene3D - 130 255 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0301 Pvu-Chr2 3046585 3051312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0301 145 191 C2H2 Transcription Factor Family AT2G19380 42.553 2.15e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0301 K11093 - gmx:100814484 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0301 2 3046585 3051312 Pvu2g0301 2 3046585 3051312 ECH