Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0289 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAGGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCTCCAAAACCCACAACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGTTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGAGTGTACGTGTGTCCCGAACCGACATGCGTTCACCACGATCCTTCTAGAGCTTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCAAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCCGAGTCAGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCGGCGGCGGTGGCTACGCCTCCCCCGCCTCCTGCACCGCCGGCTAGTCCTAAGTCAAACAGTGTTGTTGTATCGTCGTCTGCTTTGCAGACACAAAATCCAGAGTTGCCAGAAAATTCCCCTCAAGTCATAGAAGAAACGCAGGCTAATCCTGCTATGAGTGGAAGCTGTAGCAGCAGCGGTACCAGTACCAGCACCACTAGCTCAACAAGCAACAGCAATGGTGGGGGTAGCAGCAGTGTATTTGCAAGCCTGTTTGCTTCATCAACAGCAGCATCCGCAACTGCAAGCCTCCATTCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCAAGGCCTTCATCTTCGGAGCCCATCTCTCTGTGCCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTACAGGAGTGCCGTCAATATGCCCCACCGCCACAGCCAGCCATGTCCGCTACTGCTTTGCTACAGAAAGCCGCCCAAATGGGTGCAGCTGCCACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCGTCTGCGTCAACCTCATCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGCAGCCAGGGGAACCGGAGGGTGCCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCCTGCGATGGCAGCTCTGGACTAAAGGAGTTAATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCTGCTGGGGGCAACCCCGGTGGAGGCTTATCGGCACTTATTACCTCAATTGGTGGCAGTCTGGATGTTACTGCTGCTGCAGCAGCAGCATCCTTTGGCAGCGGAGAATTCCCTGGCAAAGATATTGGGAGGAGTACTTGA 1566 0.5326 MPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPAAVATPPPPPAPPASPKSNSVVVSSSALQTQNPELPENSPQVIEETQANPAMSGSCSSSGTSTSTTSSTSNSNGGGSSSVFASLFASSTAASATASLHSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAASFGSGEFPGKDIGRST* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0289 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 520 - -
Pvu2g0289 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Pvu2g0289 521 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pvu2g0289 521 Gene3D Classic Zinc Finger 115 195 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 220 235 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 1 43 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 195 214 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 236 295 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 195 295 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 412 438 - -
Pvu2g0289 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 520 - -
Pvu2g0289 521 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Pvu2g0289 521 SMART c2h2final6 137 157 IPR013087 -
Pvu2g0289 521 SMART c2h2final6 102 132 IPR013087 -
Pvu2g0289 521 SMART c2h2final6 61 83 IPR013087 -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 9 30 - -
Pvu2g0289 521 Gene3D Classic Zinc Finger 41 107 - -
Pvu2g0289 521 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0289 Pvu-Chr2 2950493 2954088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0289 1 521 IDZ Gene Family AT5G66730 60.182 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g0289 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0289 K25869 - gmx:100806404 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0289 2 2950493 2954088 Pvu2g0289 2 2950493 2954088 ECH
Pvu3g2598 3 48029628 48033140 Pvu2g0289 2 2950493 2954088 ECH
Pvu2g0289 2 2950493 2954088 Pvu3g2598 3 48029628 48033140 PCT